Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 EI24P3-201ENST00000399046 1062 ntBASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 PPP1R11P1-201ENST00000486095 376 ntBASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 ENSA-211ENST00000503345 793 ntTSL 3 BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 NOP56P3-201ENST00000549457 385 ntBASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 AC012468.1-201ENST00000604888 430 ntBASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
SHROOM4Q9ULL8 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 RNU1-14P-201ENST00000362759 152 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 AP000357.1-201ENST00000409926 1165 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 AL157831.1-201ENST00000426134 473 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 AC007000.2-201ENST00000442564 487 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 SNORA59A-201ENST00000459326 152 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 AC110768.1-201ENST00000509222 400 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 PAICSP4-201ENST00000517543 1253 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 AC233266.2-201ENST00000567067 528 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 AC015967.1-201ENST00000619893 476 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 TEX41-300ENST00000631048 69 ntTSL 5 BASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 FP325313.1-201ENST00000638228 703 ntBASIC8.18□□□□□ -1.1
SHROOM4Q9ULL8 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 RLIMP1-201ENST00000339626 1680 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 TTC39DP-201ENST00000416781 1688 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 RN7SKP235-201ENST00000410662 305 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 RNU2-72P-201ENST00000411175 163 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 COX6B1P7-201ENST00000430845 235 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 AC069304.1-201ENST00000491593 704 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 AC026782.2-201ENST00000510845 636 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 AP000619.3-201ENST00000535634 1127 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 TVP23BP1-201ENST00000557500 617 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 AC010487.1-201ENST00000594408 1172 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 Z98200.1-201ENST00000607298 470 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 AC018816.2-201ENST00000621460 353 ntBASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.1
SHROOM4Q9ULL8 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 USP9YP19-201ENST00000412165 485 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 AC115285.1-201ENST00000424879 736 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 GTF3AP5-201ENST00000442645 697 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 AC006499.5-201ENST00000505037 514 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 PGBD4P4-201ENST00000509673 613 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 RNA5SP497-201ENST00000516081 97 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 AL049870.4-201ENST00000555741 486 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 AC025016.1-201ENST00000616746 682 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 AC234782.5-201ENST00000617723 324 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 CASC19-284ENST00000642142 1868 ntBASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
SHROOM4Q9ULL8 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 NDUFB4P4-201ENST00000404822 243 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AL513321.1-201ENST00000441175 761 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AL353718.1-201ENST00000451028 517 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AC010374.1-201ENST00000503762 1237 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 CDH12P2-201ENST00000504393 298 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 NPM1P35-201ENST00000533043 868 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AC023158.1-201ENST00000561632 1025 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AC010608.2-201ENST00000624830 470 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 AC008013.2-202ENST00000637965 364 ntBASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
SHROOM4Q9ULL8 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
SHROOM4Q9ULL8 A2MP1-204ENST00000566278 4130 ntBASIC8.15□□□□□ -1.11
SHROOM4Q9ULL8 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.11
SHROOM4Q9ULL8 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.11
SHROOM4Q9ULL8 MIR200C-201ENST00000384980 68 ntBASIC8.14□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms