Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC115285.1-201ENST00000424879 736 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 RPL21P110-201ENST00000433345 446 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 RPS7P2-201ENST00000435134 607 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 NMNAT1P2-201ENST00000435192 860 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC016831.4-201ENST00000438302 307 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 MTND1P33-201ENST00000446251 917 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 RHEBP2-201ENST00000450289 600 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 RPL23AP37-201ENST00000479658 549 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 SCARNA22-201ENST00000503991 125 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 IGKV1-32-201ENST00000519290 311 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 NPM1P6-201ENST00000521088 871 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC093249.4-201ENST00000564755 259 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 CYCSP40-201ENST00000575927 294 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC098935.2-201ENST00000604222 466 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AL392112.1-201ENST00000605115 829 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AL136370.1-201ENST00000608166 691 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AL133445.2-201ENST00000611191 527 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 MIR6820-201ENST00000611508 62 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC234782.5-201ENST00000617723 324 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS28Q9UK41 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AL590396.4-201ENST00000636779 956 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS28Q9UK41 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS28Q9UK41 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS28Q9UK41 SALL4P2-201ENST00000423288 2910 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AL590240.1-201ENST00000334118 313 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 RNVU1-6-201ENST00000364688 164 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 RNU6-77P-201ENST00000410554 91 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 FABP7P1-201ENST00000424004 391 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 RPL37P1-201ENST00000432310 284 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC000041.1-201ENST00000439655 175 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 HMGB1P48-201ENST00000446155 598 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 SEPT14P24-201ENST00000447236 180 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC005002.1-201ENST00000447458 540 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 RPL7P31-201ENST00000450192 724 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC008280.2-201ENST00000455473 307 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 RPS29P22-201ENST00000472363 168 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC008885.2-201ENST00000509506 930 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 RPL7L1P13-201ENST00000511702 739 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AP003066.2-201ENST00000529375 555 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 PDCD5P1-201ENST00000543528 309 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC137768.1-201ENST00000549998 553 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC104785.1-201ENST00000603220 588 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC007275.1-201ENST00000621243 671 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC010872.1-201ENST00000624225 675 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC103798.2-201ENST00000624292 632 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 DDX18P5-201ENST00000534547 1306 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC010928.1-201ENST00000592477 1447 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 CASC19-206ENST00000641028 1430 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS28Q9UK41 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
VPS28Q9UK41 AC012618.3-205ENST00000637896 1496 ntBASIC4.88□□□□□ -1.63
VPS28Q9UK41 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms