Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 RNA5SP375-201ENST00000362975 119 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC116036.1-201ENST00000412199 367 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AMD1P2-201ENST00000412936 992 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AF228730.4-201ENST00000421457 183 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC007677.1-201ENST00000445757 515 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 YWHAQP9-201ENST00000445891 512 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 RPL23AP60-201ENST00000450011 454 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 SNRPGP6-201ENST00000451124 220 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AL133244.1-201ENST00000456007 258 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC114728.1-201ENST00000488289 483 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC007182.2-201ENST00000489251 402 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 RN7SL193P-201ENST00000491708 276 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 TRIM51DP-201ENST00000529746 596 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AP002373.2-201ENST00000541631 1060 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 ARL2BPP2-201ENST00000550907 489 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC022884.3-201ENST00000579571 248 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC011840.5-201ENST00000582125 771 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC245014.2-201ENST00000603689 287 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AL359999.1-201ENST00000604513 294 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 BNIP3P10-201ENST00000605360 577 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC246785.4-201ENST00000605374 287 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 MIR6793-201ENST00000612376 63 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AC129915.3-201ENST00000634128 948 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 ATE1-AS1-202ENST00000636460 506 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 GNL2P1-201ENST00000451274 2190 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 RBPJP2-201ENST00000618187 1444 ntBASIC6.56□□□□□ -1.36
CNTN3Q9P232 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CNTN3Q9P232 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.56□□□□□ -1.36
CNTN3Q9P232 AP000547.3-204ENST00000588548 2523 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 AC009779.8-201ENST00000641684 4384 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CNTN3Q9P232 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CNTN3Q9P232 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 Y_RNA.142-201ENST00000363491 102 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 RNY4P34-201ENST00000364779 95 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 Y_RNA.460-201ENST00000384255 102 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 RNU6-809P-201ENST00000384461 107 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 RNU6-878P-201ENST00000384578 110 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 SNRPEP2-201ENST00000397592 279 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 PEX12P1-201ENST00000400284 1048 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 AL049693.1-201ENST00000402760 611 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 AL390316.1-201ENST00000406279 553 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 MIR1302-11-201ENST00000408051 138 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 MIR1302-9-201ENST00000408365 138 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 MIR1302-10-201ENST00000408734 138 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 RNU6-272P-201ENST00000411028 104 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 HMGN1P20-201ENST00000411849 300 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 RPS6P23-201ENST00000413224 722 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 RPL35AP3-201ENST00000414680 288 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 NDUFA5P7-201ENST00000452914 242 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 HLA-DPA3-207ENST00000454398 229 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 AC112187.1-201ENST00000455837 479 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 AC099563.1-201ENST00000456086 418 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 MEMO1P3-201ENST00000459811 302 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 RPL38P1-201ENST00000460914 211 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CNTN3Q9P232 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.55□□□□□ -1.36
CNTN3Q9P232 Y_RNA.667-201ENST00000516212 107 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 Y_RNA.675-201ENST00000516389 149 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 RNA5SP438-201ENST00000516561 112 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 COX6B1P6-201ENST00000522347 255 ntBASIC6.55□□□□□ -1.36
CNTN3Q9P232 MAL2-203ENST00000534619 578 ntTSL 4 BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms