Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RN7SL205P-201ENST00000490174 284 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AC025164.1-201ENST00000496249 478 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AC027338.1-201ENST00000514840 825 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 LY96-202ENST00000518893 430 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 MIR3936-201ENST00000584304 110 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AC245100.7-201ENST00000609678 442 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 AL158196.1-201ENST00000616786 434 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 C2orf27A-204ENST00000623058 969 ntBASIC6.15□□□□□ -1.42
CHMP4AQ9BY43 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
CHMP4AQ9BY43 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4AQ9BY43 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4AQ9BY43 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.43
CHMP4AQ9BY43 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4AQ9BY43 DHX9P1-201ENST00000436565 3076 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 MFF-206ENST00000392059 1710 ntTSL 5 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 RNVU1-6-201ENST00000364688 164 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 Z98745.1-201ENST00000402553 494 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 RNU2-21P-201ENST00000410368 188 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC245028.1-201ENST00000423259 256 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC234779.1-201ENST00000425910 285 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 UBE2V1P5-201ENST00000440070 405 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 HMGB3P30-201ENST00000457863 606 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 COX6B1P2-201ENST00000489624 230 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 Vault.1-201ENST00000516474 102 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 RN7SL690P-201ENST00000582087 240 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC017100.2-201ENST00000584628 355 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AC097372.4-201ENST00000625025 466 ntBASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
CHMP4AQ9BY43 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 MFSD8-242ENST00000641690 4199 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC027290.2-201ENST00000623210 18662 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC008725.1-201ENST00000605123 2263 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 RNU6-1293P-201ENST00000384077 107 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 MIR585-201ENST00000384887 94 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 MIR192-201ENST00000384915 110 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 RN7SKP177-201ENST00000410567 355 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 MTCO1P43-201ENST00000431831 488 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AL162591.2-201ENST00000449634 317 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 SNRPGP5-201ENST00000456003 220 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC010326.1-201ENST00000462726 602 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 RPL21P71-201ENST00000465598 459 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 ALG13-211ENST00000473389 693 ntTSL 2 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 RNA5SP303-201ENST00000516192 130 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AL110118.1-201ENST00000553543 400 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC098935.2-201ENST00000604222 466 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 IGKV2OR2-2-201ENST00000605025 300 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 MIR6853-201ENST00000619642 74 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 RNU6-156P-201ENST00000621869 107 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 ALG13-230ENST00000623189 458 ntTSL 3 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC006065.5-201ENST00000623427 349 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AL109659.3-201ENST00000624985 950 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AL590396.2-201ENST00000636511 1041 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AC009643.2-201ENST00000603543 1448 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 AL442639.1-201ENST00000625030 1899 ntBASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.13□□□□□ -1.43
CHMP4AQ9BY43 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms