Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AP002001.2-201ENST00000529025 1469 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.71□□□□□ -1.81
VPS13AQ96RL7 AC017079.2-201ENST00000416102 485 ntBASIC3.71□□□□□ -1.81
VPS13AQ96RL7 AC096644.3-201ENST00000416788 338 ntBASIC3.71□□□□□ -1.81
VPS13AQ96RL7 NMNAT1P2-201ENST00000435192 860 ntBASIC3.71□□□□□ -1.81
VPS13AQ96RL7 AC023141.12-201ENST00000512399 199 ntBASIC3.71□□□□□ -1.81
VPS13AQ96RL7 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
VPS13AQ96RL7 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.81
VPS13AQ96RL7 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC3.71□□□□□ -1.81
VPS13AQ96RL7 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC3.71□□□□□ -1.81
VPS13AQ96RL7 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 CROT-204ENST00000442291 1993 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 AL080315.1-201ENST00000406055 466 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 BX323014.1-201ENST00000412876 237 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 ATP5JP1-201ENST00000431631 322 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 RNA5SP164-201ENST00000516533 110 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 AC007066.2-202ENST00000566531 914 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 AC023509.5-201ENST00000617434 807 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 FRG1EP-201ENST00000634469 770 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 SNORD9-201ENST00000362566 104 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 RNU6-729P-201ENST00000384399 107 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 SNORA3C-201ENST00000408792 125 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 MRPS21P9-201ENST00000571150 257 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 AL451007.1-201ENST00000595491 289 ntBASIC3.71□□□□□ -1.82
VPS13AQ96RL7 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS13AQ96RL7 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 SNORD17-201ENST00000390930 237 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 TAF9BP1-201ENST00000396646 746 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 RNA5SP306-201ENST00000411087 107 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 FABP3P2-201ENST00000453169 399 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 RPL27AP5-201ENST00000469428 449 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AC092747.2-201ENST00000545069 983 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 BANCR-201ENST00000624238 473 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 HSPA8P17-201ENST00000427029 1382 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 RNU6-7-201ENST00000364784 107 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 RNU6-8-201ENST00000365467 107 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 RSL24D1P3-201ENST00000449255 495 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 DNAJC19P8-201ENST00000452887 259 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AC103843.2-201ENST00000530523 682 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AC011611.1-201ENST00000552179 197 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AC104763.2-201ENST00000604179 382 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AL451044.1-201ENST00000604867 238 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AC068870.3-201ENST00000625077 2536 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.7□□□□□ -1.82
VPS13AQ96RL7 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
VPS13AQ96RL7 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AC091544.4-201ENST00000555268 342 ntBASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AC079171.1-201ENST00000568788 914 ntBASIC3.69□□□□□ -1.82
VPS13AQ96RL7 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AL591419.1-201ENST00000427423 339 ntBASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AC005019.1-201ENST00000436455 431 ntBASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AL606834.2-201ENST00000602954 668 ntBASIC3.69□□□□□ -1.82
VPS13AQ96RL7 AL392088.2-201ENST00000637607 285 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms