Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC114781.5-201ENST00000615297 108 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC104307.1-201ENST00000616142 196 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 LINC01808-202ENST00000641680 1116 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 SDHCP2-201ENST00000398565 501 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AL359643.1-201ENST00000404109 423 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 MIR1271-201ENST00000408537 86 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 IPMKP1-201ENST00000425988 855 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AL031736.2-201ENST00000426573 787 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 ZNF965P-201ENST00000432501 817 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 XKRY2-201ENST00000442362 1093 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 RN7SL810P-201ENST00000493031 276 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC135352.1-201ENST00000506173 1418 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 NDUFB4P12-201ENST00000513465 390 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 RNA5SP303-201ENST00000516192 130 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC004923.2-201ENST00000529649 369 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 MTND4LP24-201ENST00000572277 291 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 PCNAP1-202ENST00000595299 752 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AC015802.5-201ENST00000607478 399 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 AL359922.3-201ENST00000624779 1670 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 CASC19-206ENST00000641028 1430 ntBASIC4.59□□□□□ -1.67
HDDC3Q8N4P3 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.59□□□□□ -1.68
HDDC3Q8N4P3 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
HDDC3Q8N4P3 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.68
HDDC3Q8N4P3 LINC01109-201ENST00000603837 3081 ntBASIC4.59□□□□□ -1.68
HDDC3Q8N4P3 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AC126323.6-202ENST00000568092 3511 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 RPL23AP59-201ENST00000399415 461 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AL080315.1-201ENST00000406055 466 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AC234782.4-201ENST00000417646 1048 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 MTND4P24-201ENST00000424002 397 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 CKS1BP6-201ENST00000424932 240 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 RPS29P17-201ENST00000430795 166 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 FTH1P16-201ENST00000435241 552 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 ELOCP11-201ENST00000436690 332 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 ACTR3P2-201ENST00000439585 1257 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AL353093.1-201ENST00000441292 436 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 ELOCP16-201ENST00000444494 332 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 Z95327.1-201ENST00000446082 482 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 ISCUP1-201ENST00000454451 448 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 SNORA84-201ENST00000459229 133 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 RPL7P19-201ENST00000469948 618 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AC093663.2-201ENST00000484625 313 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 SNORA31.13-201ENST00000516624 135 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AL121594.4-201ENST00000556211 1196 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AC015871.5-202ENST00000623252 701 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 AP000843.1-201ENST00000624880 701 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 DHX9P1-201ENST00000436565 3076 ntBASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
HDDC3Q8N4P3 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms