Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RPS26P21-201ENST00000475397 348 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC010374.1-201ENST00000503762 1237 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC110775.1-201ENST00000513721 462 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 MAL2-208ENST00000523307 556 ntTSL 4 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC007536.1-201ENST00000533382 349 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC138393.1-206ENST00000540997 1886 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC124916.2-201ENST00000604416 224 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 MIR8082-201ENST00000612488 81 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC110801.1-201ENST00000623590 212 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC019080.5-201ENST00000624891 757 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 CR589904.1-203ENST00000636515 318 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 RMST-202ENST00000541282 2099 ntTSL 2 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 API5P2-201ENST00000397055 1498 ntBASIC2.38□□□□□ -2.03
LINC00643Q86TS7 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
LINC00643Q86TS7 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 NPL-202ENST00000367552 745 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 SNORA70E-201ENST00000384492 135 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AP000567.1-201ENST00000406413 156 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 RN7SKP100-201ENST00000411258 284 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 TCEA1P2-201ENST00000420496 906 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC093155.2-201ENST00000420734 937 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 HIGD1AP12-201ENST00000427832 281 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 VN1R96P-201ENST00000446052 858 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 GAPDHP27-201ENST00000447427 1020 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC092647.2-201ENST00000452998 253 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AURKAPS2-201ENST00000454983 333 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AL354872.1-201ENST00000456361 967 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 HMGB3P30-201ENST00000457863 606 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 SCARNA22-201ENST00000503991 125 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 UCHL1-AS1-202ENST00000510073 451 ntTSL 3 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC104027.1-201ENST00000521887 300 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC234771.5-201ENST00000600161 514 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC027243.2-201ENST00000602530 724 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 MEMO1P5-201ENST00000604810 406 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AL353807.4-201ENST00000604995 257 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC010680.4-201ENST00000605334 543 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AC025175.1-201ENST00000606482 759 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AL356274.2-201ENST00000624379 3752 ntBASIC2.37□□□□□ -2.03
LINC00643Q86TS7 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
LINC00643Q86TS7 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 GTF2H2B-203ENST00000508065 1432 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL136131.1-201ENST00000406079 803 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 RPL5P18-201ENST00000406671 891 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 RN7SKP38-201ENST00000410782 309 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL513325.1-201ENST00000417716 1034 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC022022.1-201ENST00000430304 178 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms