Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 AP003392.5-201ENST00000607857 415 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A3P12111 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A3P12111 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.94□□□□□ -1.78
COL6A3P12111 AC024341.1-201ENST00000526444 1552 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A3P12111 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A3P12111 Y_RNA.226-201ENST00000364337 114 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 BTF3P9-201ENST00000418784 283 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 ISCA1P6-201ENST00000427740 390 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 VN1R25P-201ENST00000443385 738 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 AL136097.1-201ENST00000456945 913 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 CCDC75P1-201ENST00000469247 791 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 SNORA70.17-201ENST00000516449 133 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
COL6A3P12111 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
COL6A3P12111 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC3.93□□□□□ -1.78
COL6A3P12111 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.93□□□□□ -1.78
COL6A3P12111 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 RPL21P110-201ENST00000433345 446 ntBASIC3.93□□□□□ -1.78
COL6A3P12111 AC111000.6-201ENST00000514471 709 ntBASIC3.93□□□□□ -1.78
COL6A3P12111 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.93□□□□□ -1.78
COL6A3P12111 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC3.93□□□□□ -1.78
COL6A3P12111 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
COL6A3P12111 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
COL6A3P12111 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 RPL5P2-201ENST00000429598 854 ntBASIC3.93□□□□□ -1.78
COL6A3P12111 CYCSP24-201ENST00000445119 316 ntBASIC3.93□□□□□ -1.78
COL6A3P12111 OR52E3P-201ENST00000452083 936 ntBASIC3.93□□□□□ -1.78
COL6A3P12111 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.93□□□□□ -1.78
COL6A3P12111 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC3.93□□□□□ -1.78
COL6A3P12111 AP003175.1-201ENST00000641383 6658 ntBASIC3.93□□□□□ -1.78
COL6A3P12111 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL6A3P12111 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 RNU4-35P-201ENST00000362588 141 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 RPS26P2-201ENST00000440331 348 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 HMGB1P21-201ENST00000502313 581 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 RNA5SP446-201ENST00000515955 82 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.92□□□□□ -1.78
COL6A3P12111 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 AL137141.1-201ENST00000624622 4836 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 RNA5SP235-201ENST00000365411 114 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 AL136131.1-201ENST00000406079 803 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.92□□□□□ -1.78
COL6A3P12111 AC099063.2-201ENST00000446360 662 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.92□□□□□ -1.78
COL6A3P12111 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC3.92□□□□□ -1.78
COL6A3P12111 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 MFSD8-242ENST00000641690 4199 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
COL6A3P12111 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
COL6A3P12111 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC3.92□□□□□ -1.78
COL6A3P12111 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC3.92□□□□□ -1.78
COL6A3P12111 AC010266.2-201ENST00000564741 3255 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.92□□□□□ -1.78
COL6A3P12111 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL6A3P12111 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
COL6A3P12111 AL513175.1-201ENST00000431492 780 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 AC009963.4-201ENST00000448535 339 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 VN1R32P-201ENST00000452234 905 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 NPM1P13-201ENST00000452663 865 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.92□□□□□ -1.78
COL6A3P12111 AC006539.2-201ENST00000601729 572 ntBASIC3.92□□□□□ -1.78
COL6A3P12111 ASNSP3-201ENST00000451989 1306 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL6A3P12111 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL6A3P12111 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL6A3P12111 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.91□□□□□ -1.78
COL6A3P12111 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.91□□□□□ -1.78
COL6A3P12111 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.91□□□□□ -1.78
COL6A3P12111 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.91□□□□□ -1.78
COL6A3P12111 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
COL6A3P12111 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms