Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 XKRYP5-201ENST00000449659 483 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 DHFRP3-201ENST00000455595 559 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AC068587.2-201ENST00000478386 781 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 RAB9BP1-201ENST00000519581 626 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 GSTP1P1-201ENST00000548078 319 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 MIR3936-201ENST00000584304 110 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AC005191.1-201ENST00000603950 358 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AL356218.2-201ENST00000605264 187 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 AC245100.7-201ENST00000609678 442 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 VN1R9P-201ENST00000614184 867 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 RPL23AP61-201ENST00000623642 466 ntBASIC4.8□□□□□ -1.64
SIX4Q9UIU6 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SIX4Q9UIU6 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC025031.4-201ENST00000621248 3271 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 MIR141-201ENST00000384975 95 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 HMGB1P10-201ENST00000395823 563 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AL359643.1-201ENST00000404109 423 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 SSR1P2-201ENST00000415208 787 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 PNRC2P1-201ENST00000423940 420 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC092447.2-201ENST00000435487 669 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 RPS27AP17-201ENST00000463344 455 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 NIP7P2-201ENST00000485801 544 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 RNU6-276P-201ENST00000516114 96 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 RN7SKP265-201ENST00000516448 223 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 IGLVIV-65-201ENST00000517313 360 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 SNORD39.2-201ENST00000579995 76 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AL137072.1-201ENST00000603444 466 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC010201.1-201ENST00000605051 540 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC008966.2-201ENST00000606157 453 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC090948.1-201ENST00000607464 549 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 RMST_10.1-201ENST00000616309 154 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC048344.4-201ENST00000619744 527 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 AC006065.6-201ENST00000625201 545 ntBASIC4.79□□□□□ -1.64
SIX4Q9UIU6 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SIX4Q9UIU6 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 MAPK10-304ENST00000641341 3984 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 ANAPC10P1-201ENST00000395991 556 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 AL592293.2-201ENST00000422292 996 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 RPL12P34-201ENST00000424532 479 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 CDY14P-201ENST00000431260 1014 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 RPL34P6-201ENST00000432390 345 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 UBE2V1P3-201ENST00000439651 417 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 CDY12P-201ENST00000440679 1015 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 RPL6P5-201ENST00000445678 828 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 CDY13P-201ENST00000445813 1015 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 EIF2S2P2-201ENST00000447161 982 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 HMGB1P5-202ENST00000451497 985 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 CDY23P-201ENST00000451661 1014 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 BTG4P1-201ENST00000510421 183 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 AP001207.2-201ENST00000519490 539 ntBASIC4.78□□□□□ -1.64
SIX4Q9UIU6 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.78□□□□□ -1.64
SIX4Q9UIU6 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms