Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 OR5BE1P-201ENST00000425977 939 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 VDAC1P6-201ENST00000430062 855 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC092427.1-201ENST00000439177 601 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 RPL36AP39-201ENST00000445859 318 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 COX6CP12-201ENST00000446748 202 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 MTCO1P48-201ENST00000448024 1096 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 RPS23P6-201ENST00000466136 431 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 RPL7P51-201ENST00000490532 749 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 DEFB131D-201ENST00000526803 184 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 ZDHHC20P3-201ENST00000531576 336 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 DPPA2P4-201ENST00000563717 878 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC012414.6-201ENST00000568241 401 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC063977.5-201ENST00000601044 974 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AL133481.2-203ENST00000607558 139 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 OR5BE1P-202ENST00000641168 1176 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC019072.1-201ENST00000604535 1551 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC027514.1-201ENST00000588561 1603 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 RNU6-723P-201ENST00000383973 107 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 RNU6-1042P-201ENST00000384204 107 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AL450338.1-201ENST00000407987 512 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 ATG4AP1-201ENST00000416893 538 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC005033.1-201ENST00000428904 813 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC002504.1-201ENST00000438281 691 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 RPS24P1-201ENST00000438550 371 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AL161636.2-201ENST00000445179 927 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 HMGN1P36-201ENST00000446623 298 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AL358876.1-201ENST00000453364 1075 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 SSXP1-201ENST00000453640 473 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AL645937.3-201ENST00000453647 936 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 MTCYBP1-201ENST00000454315 1119 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 RPS23P2-201ENST00000463671 415 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC010301.1-201ENST00000473936 355 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC113430.1-201ENST00000506872 718 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 RNU6-615P-201ENST00000516065 106 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC112191.2-201ENST00000522428 333 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 PSMB7P1-201ENST00000556349 514 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC010547.6-201ENST00000571789 193 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AL513327.3-201ENST00000602618 469 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 NANOGP3-201ENST00000605855 286 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AP001521.1-201ENST00000609150 300 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC243773.3-201ENST00000613270 256 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC090607.5-201ENST00000615692 224 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AC009509.4-201ENST00000619202 509 ntBASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.67□□□□□ -1.5
TRIM39Q9HCM9 AP000473.2-201ENST00000602659 1537 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms