Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS13AQ96RL7 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC3.75□□□□□ -1.81
VPS13AQ96RL7 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AC011755.1-201ENST00000623763 2049 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 ARF4P3-201ENST00000397387 509 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AC009963.4-201ENST00000448535 339 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 RPS17P13-201ENST00000448974 407 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AC084759.1-201ENST00000561168 290 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AC064801.1-201ENST00000612025 407 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 ATP5A1P2-202ENST00000616464 443 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AC006386.2-201ENST00000624491 75 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AC012005.1-201ENST00000624575 75 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 SNORA5.1-201ENST00000384275 131 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 RNU11-201ENST00000387069 134 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 RPL29P14-201ENST00000495837 428 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AC080014.1-201ENST00000496877 1201 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 RNU7-143P-201ENST00000516781 65 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 MIR4769-201ENST00000584126 77 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 AL360012.1-201ENST00000602813 131 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 RNA5SP439-201ENST00000617595 124 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13AQ96RL7 MFSD8-242ENST00000641690 4199 ntBASIC3.74□□□□□ -1.81
VPS13AQ96RL7 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 CR383656.14-201ENST00000551951 406 ntBASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AL022393.1-201ENST00000625142 1677 ntBASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AL513548.1-201ENST00000562904 1724 ntBASIC3.73□□□□□ -1.81
VPS13AQ96RL7 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AL121890.1-201ENST00000435457 205 ntBASIC3.73□□□□□ -1.81
VPS13AQ96RL7 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AL365440.1-201ENST00000436135 2167 ntBASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 RNU1-44P-201ENST00000384453 163 ntBASIC3.73□□□□□ -1.81
VPS13AQ96RL7 OSTCP5-201ENST00000425293 453 ntBASIC3.73□□□□□ -1.81
VPS13AQ96RL7 RPL32P34-201ENST00000486380 400 ntBASIC3.73□□□□□ -1.81
VPS13AQ96RL7 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13AQ96RL7 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 SNORD35B-201ENST00000363660 87 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AL121878.1-201ENST00000418638 859 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 HMGB1P37-201ENST00000439613 609 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AC138409.2-202ENST00000507274 458 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 PTGES3P3-201ENST00000511479 482 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AL139089.1-201ENST00000620372 975 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AC006517.1-201ENST00000480485 328 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS13AQ96RL7 AC027216.1-201ENST00000577726 685 ntBASIC3.72□□□□□ -1.81
VPS13AQ96RL7 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms