Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.73□□□□□ -1.65
HMGCS2P54868 SNORA60-201ENST00000362396 134 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 SNORA73.2-201ENST00000364946 201 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 RNA5SP22-201ENST00000365393 109 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGCS2P54868 MIR449B-201ENST00000384995 97 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HMGCS2P54868 VDAC1P9-201ENST00000412766 841 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGCS2P54868 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.73□□□□□ -1.65
HMGCS2P54868 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGCS2P54868 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.73□□□□□ -1.65
HMGCS2P54868 AL358472.1-201ENST00000431295 329 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 HMGB3P10-201ENST00000434734 572 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 XKRYP6-201ENST00000440468 1116 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGCS2P54868 XKRYP3-201ENST00000442113 1116 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.73□□□□□ -1.65
HMGCS2P54868 AL445433.1-201ENST00000457507 257 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 RPL23AP65-201ENST00000475608 468 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 ACTR3P3-201ENST00000480448 893 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 OR9N1P-201ENST00000491296 333 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGCS2P54868 FTH1P11-201ENST00000517577 551 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.73□□□□□ -1.65
HMGCS2P54868 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.73□□□□□ -1.65
HMGCS2P54868 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.73□□□□□ -1.65
HMGCS2P54868 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGCS2P54868 AC245128.3-201ENST00000594721 748 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 GMCL1P2-201ENST00000605230 823 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGCS2P54868 AL138721.1-201ENST00000616756 179 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 FP236240.3-201ENST00000623061 327 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.73□□□□□ -1.65
HMGCS2P54868 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.73□□□□□ -1.65
HMGCS2P54868 AC093775.1-201ENST00000624154 1868 ntBASIC4.73□□□□□ -1.65
HMGCS2P54868 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
HMGCS2P54868 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGCS2P54868 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGCS2P54868 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
HMGCS2P54868 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGCS2P54868 SNORD46.1-201ENST00000364139 104 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 MIR30B-201ENST00000384850 88 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 RPS3AP25-201ENST00000411660 793 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.72□□□□□ -1.65
HMGCS2P54868 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGCS2P54868 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGCS2P54868 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGCS2P54868 YME1L1P1-201ENST00000429435 297 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGCS2P54868 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
HMGCS2P54868 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGCS2P54868 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGCS2P54868 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGCS2P54868 MTND6P32-201ENST00000457611 483 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 RPL29P14-201ENST00000495837 428 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGCS2P54868 RN7SKP141-201ENST00000516167 338 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 PHBP17-201ENST00000528576 541 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGCS2P54868 AC025627.2-201ENST00000576220 160 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 AC114878.2-201ENST00000604863 1251 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGCS2P54868 AC015871.5-202ENST00000623252 701 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 AL356121.2-201ENST00000624715 780 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGCS2P54868 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGCS2P54868 AC003985.2-201ENST00000562268 1669 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 ERCC6-202ENST00000374127 1782 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGCS2P54868 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGCS2P54868 SAMMSON-213ENST00000641336 1521 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 MAPK10-304ENST00000641341 3984 ntBASIC4.72□□□□□ -1.65
HMGCS2P54868 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
HMGCS2P54868 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
HMGCS2P54868 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGCS2P54868 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HMGCS2P54868 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGCS2P54868 AC019072.1-201ENST00000604535 1551 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HMGCS2P54868 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HMGCS2P54868 SNORA11.1-201ENST00000408133 129 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 UBTFL3-201ENST00000418934 1024 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGCS2P54868 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.71□□□□□ -1.66
HMGCS2P54868 RPL6P5-201ENST00000445678 828 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 RAD1P2-201ENST00000446414 663 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 OR6C72P-201ENST00000451403 892 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HMGCS2P54868 UBTFL6-201ENST00000477929 1024 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGCS2P54868 RNU6-352P-201ENST00000516908 107 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 NPM1P52-201ENST00000518264 846 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGCS2P54868 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.71□□□□□ -1.66
HMGCS2P54868 AC063950.1-201ENST00000552036 308 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 RPL23AP87-202ENST00000573039 466 ntBASIC4.71□□□□□ -1.66
HMGCS2P54868 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms