Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PPBPP1-201ENST00000510807 373 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 RPL23AP94-201ENST00000512518 302 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 HMGN1P15-201ENST00000513870 295 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.29□□□□□ -1.72
COL4A4P53420 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.29□□□□□ -1.72
COL4A4P53420 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.29□□□□□ -1.72
COL4A4P53420 AC063950.1-201ENST00000552036 308 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.29□□□□□ -1.72
COL4A4P53420 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.29□□□□□ -1.72
COL4A4P53420 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A4P53420 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
COL4A4P53420 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A4P53420 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A4P53420 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A4P53420 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
COL4A4P53420 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.72
COL4A4P53420 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A4P53420 SYF2P2-201ENST00000417620 583 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A4P53420 NPM1P34-201ENST00000428821 893 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 AC011742.1-201ENST00000431448 434 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.28□□□□□ -1.72
COL4A4P53420 WBP1LP4-201ENST00000505043 344 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 RN7SKP13-201ENST00000515933 244 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.28□□□□□ -1.72
COL4A4P53420 AC024224.1-201ENST00000538284 609 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.28□□□□□ -1.72
COL4A4P53420 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.28□□□□□ -1.72
COL4A4P53420 MIR5195-201ENST00000583555 115 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 AC104662.1-201ENST00000604448 511 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 AC138627.1-204ENST00000641894 765 ntBASIC4.28□□□□□ -1.72
COL4A4P53420 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
COL4A4P53420 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A4P53420 AL356274.2-201ENST00000624379 3752 ntBASIC4.28□□□□□ -1.73
COL4A4P53420 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
COL4A4P53420 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
COL4A4P53420 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A4P53420 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A4P53420 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.27□□□□□ -1.73
COL4A4P53420 RN7SL293P-201ENST00000481765 281 ntBASIC4.27□□□□□ -1.73
COL4A4P53420 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.27□□□□□ -1.73
COL4A4P53420 UBE2CP3-201ENST00000502715 450 ntBASIC4.27□□□□□ -1.73
COL4A4P53420 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 AC091516.1-201ENST00000549191 703 ntBASIC4.27□□□□□ -1.73
COL4A4P53420 A2MP1-204ENST00000566278 4130 ntBASIC4.27□□□□□ -1.73
COL4A4P53420 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.27□□□□□ -1.73
COL4A4P53420 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A4P53420 AC068020.1-201ENST00000594215 661 ntBASIC4.27□□□□□ -1.73
COL4A4P53420 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.27□□□□□ -1.73
COL4A4P53420 OR51C1P-202ENST00000641159 1444 ntBASIC4.27□□□□□ -1.73
COL4A4P53420 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
COL4A4P53420 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A4P53420 AL035425.3-201ENST00000564206 4996 ntBASIC4.27□□□□□ -1.73
COL4A4P53420 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
COL4A4P53420 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
COL4A4P53420 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.27□□□□□ -1.73
COL4A4P53420 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC4.27□□□□□ -1.73
COL4A4P53420 HCFC2P1-201ENST00000392864 1592 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC4.26□□□□□ -1.73
COL4A4P53420 SAMMSON-213ENST00000641336 1521 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A4P53420 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A4P53420 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
COL4A4P53420 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A4P53420 AL122016.1-201ENST00000403365 367 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 HMGB3P19-201ENST00000403971 560 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 NPM1P25-201ENST00000429734 854 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.26□□□□□ -1.73
COL4A4P53420 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A4P53420 AL133244.1-201ENST00000456007 258 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A4P53420 SETP14-201ENST00000497538 873 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AC087369.1-201ENST00000520775 996 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A4P53420 MIR3922-201ENST00000585192 84 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AC079791.1-201ENST00000605356 973 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A4P53420 MIR7975-201ENST00000619350 68 ntBASIC4.26□□□□□ -1.73
COL4A4P53420 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
COL4A4P53420 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
COL4A4P53420 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A4P53420 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms