Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX2P35548 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 DCAF13P3-201ENST00000561147 1334 ntBASIC5.29□□□□□ -1.56
MSX2P35548 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX2P35548 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX2P35548 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX2P35548 GAPDHP24-201ENST00000328713 983 ntBASIC5.29□□□□□ -1.56
MSX2P35548 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX2P35548 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
MSX2P35548 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
MSX2P35548 RNU6-660P-201ENST00000364566 109 ntBASIC5.29□□□□□ -1.56
MSX2P35548 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 RNU6-761P-201ENST00000384148 107 ntBASIC5.29□□□□□ -1.56
MSX2P35548 Y_RNA.554-201ENST00000384672 102 ntBASIC5.29□□□□□ -1.56
MSX2P35548 MIR188-201ENST00000385034 86 ntBASIC5.29□□□□□ -1.56
MSX2P35548 MIR320B1-201ENST00000390209 79 ntBASIC5.29□□□□□ -1.56
MSX2P35548 CYCSP45-201ENST00000402289 315 ntBASIC5.29□□□□□ -1.56
MSX2P35548 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.29□□□□□ -1.56
MSX2P35548 RN7SKP222-201ENST00000410651 315 ntBASIC5.29□□□□□ -1.56
MSX2P35548 RNA5SP498-201ENST00000411342 120 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX2P35548 AC092745.2-202ENST00000411880 369 ntBASIC5.29□□□□□ -1.56
MSX2P35548 RPS6P23-201ENST00000413224 722 ntBASIC5.29□□□□□ -1.56
MSX2P35548 MTND3P23-201ENST00000431980 347 ntBASIC5.29□□□□□ -1.56
MSX2P35548 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX2P35548 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX2P35548 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 TMX2P1-201ENST00000436507 708 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC098614.3-201ENST00000438957 440 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 DNAJC19P8-201ENST00000452887 259 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 MTCO3P11-201ENST00000455103 774 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 AC110749.1-201ENST00000462007 357 ntBASIC5.29□□□□□ -1.56
MSX2P35548 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 AC099521.1-201ENST00000482557 334 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC073522.1-201ENST00000483312 377 ntBASIC5.29□□□□□ -1.56
MSX2P35548 RPL32P33-201ENST00000487023 394 ntBASIC5.29□□□□□ -1.56
MSX2P35548 IGBP1P4-201ENST00000503202 879 ntBASIC5.29□□□□□ -1.56
MSX2P35548 DYNLL1P6-201ENST00000503440 264 ntBASIC5.29□□□□□ -1.56
MSX2P35548 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX2P35548 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 AC093281.2-201ENST00000510153 597 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC091912.1-201ENST00000511351 248 ntBASIC5.29□□□□□ -1.56
MSX2P35548 RNU6-416P-201ENST00000516265 103 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX2P35548 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.29□□□□□ -1.56
MSX2P35548 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 NTS-203ENST00000551529 801 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 GTF2IP22-201ENST00000554443 182 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX2P35548 MIR4528-201ENST00000577763 90 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC010857.1-201ENST00000606398 594 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AL159169.3-201ENST00000608871 561 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AL135999.3-201ENST00000610501 812 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC007014.2-201ENST00000615581 479 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC011472.4-201ENST00000615848 491 ntBASIC5.29□□□□□ -1.56
MSX2P35548 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.29□□□□□ -1.56
MSX2P35548 OR5H6-203ENST00000642105 978 ntBASIC5.29□□□□□ -1.56
MSX2P35548 AC100757.1-201ENST00000616872 1835 ntBASIC5.29□□□□□ -1.56
MSX2P35548 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX2P35548 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX2P35548 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX2P35548 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX2P35548 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
MSX2P35548 THAP12P5-201ENST00000405864 2275 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 ELF2P3-201ENST00000445099 1506 ntBASIC5.28□□□□□ -1.56
MSX2P35548 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX2P35548 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX2P35548 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 TEX21P-201ENST00000447107 1476 ntBASIC5.28□□□□□ -1.56
MSX2P35548 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX2P35548 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms