Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SMARCA1P28370 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.68□□□□□ -1.5
SMARCA1P28370 snoZ278.1-201ENST00000517059 112 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.68□□□□□ -1.5
SMARCA1P28370 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC009117.1-201ENST00000563948 554 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC040904.1-201ENST00000590850 223 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 VN1R83P-201ENST00000595685 445 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SMARCA1P28370 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AL583856.2-201ENST00000606298 543 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 VN1R74P-201ENST00000613259 503 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 STMN1P1-201ENST00000617809 440 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AC019206.1-201ENST00000621938 425 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 OR1S1-201ENST00000624470 978 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.68□□□□□ -1.5
SMARCA1P28370 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC104446.1-201ENST00000613728 1321 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
SMARCA1P28370 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.68□□□□□ -1.5
SMARCA1P28370 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SMARCA1P28370 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SMARCA1P28370 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 BMS1P3-201ENST00000372011 932 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 RNU6-98P-201ENST00000384173 107 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 ERHP2-201ENST00000402323 299 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.67□□□□□ -1.5
SMARCA1P28370 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 RBMY2KP-201ENST00000418221 992 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 RPS26P30-201ENST00000443431 335 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AL356981.1-201ENST00000454879 684 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AURKAPS2-201ENST00000454983 333 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AC245028.2-201ENST00000458673 253 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 RPS3AP41-201ENST00000462701 778 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AC069304.1-201ENST00000491593 704 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AC082651.2-201ENST00000496833 166 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AC002456.2-201ENST00000509356 380 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC5.67□□□□□ -1.5
SMARCA1P28370 SETP1-201ENST00000556014 845 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 MIR3934-201ENST00000579806 107 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 MIR4737-201ENST00000583979 81 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AL451064.1-201ENST00000607718 471 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.67□□□□□ -1.5
SMARCA1P28370 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 IRF5P1-201ENST00000504852 2164 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SMARCA1P28370 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SMARCA1P28370 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.67□□□□□ -1.5
SMARCA1P28370 AC021242.1-201ENST00000507315 2035 ntBASIC5.67□□□□□ -1.5
SMARCA1P28370 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.67□□□□□ -1.5
SMARCA1P28370 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SMARCA1P28370 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.66□□□□□ -1.5
SMARCA1P28370 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SMARCA1P28370 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SMARCA1P28370 OR5H2-201ENST00000355273 945 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SMARCA1P28370 SNORD116.1-201ENST00000365628 92 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC5.66□□□□□ -1.5
SMARCA1P28370 SNORA40.2-201ENST00000390847 128 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 MIR937-201ENST00000401271 86 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AL357515.1-201ENST00000402967 542 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 TBCAP2-201ENST00000416175 326 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 OR4K6P-201ENST00000416478 897 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AC048351.1-201ENST00000420064 602 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC5.66□□□□□ -1.5
SMARCA1P28370 RPL7P29-201ENST00000437151 728 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC5.66□□□□□ -1.5
SMARCA1P28370 BTF3P6-201ENST00000448054 499 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AC243772.1-201ENST00000451620 410 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 snoU13.20-201ENST00000459180 104 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.66□□□□□ -1.5
SMARCA1P28370 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC5.66□□□□□ -1.5
SMARCA1P28370 AC092324.1-201ENST00000468671 324 ntBASIC5.66□□□□□ -1.5
SMARCA1P28370 RN7SL591P-201ENST00000496150 292 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms