Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX1P28360 MTND2P29-201ENST00000438595 412 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AC009518.3-201ENST00000438972 253 ntBASIC6.37□□□□□ -1.39
MSX1P28360 TXNP1-201ENST00000441872 371 ntBASIC6.37□□□□□ -1.39
MSX1P28360 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.37□□□□□ -1.39
MSX1P28360 YWHAEP1-201ENST00000453697 763 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX1P28360 MTCO3P10-201ENST00000455912 772 ntBASIC6.37□□□□□ -1.39
MSX1P28360 ELOCP24-201ENST00000456370 334 ntBASIC6.37□□□□□ -1.39
MSX1P28360 RPS15AP1-201ENST00000457423 391 ntBASIC6.37□□□□□ -1.39
MSX1P28360 HSPD1P15-201ENST00000505573 1122 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 AC091885.1-201ENST00000506658 268 ntBASIC6.37□□□□□ -1.39
MSX1P28360 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX1P28360 RNU6-764P-201ENST00000516396 105 ntBASIC6.37□□□□□ -1.39
MSX1P28360 RN7SKP11-201ENST00000517018 287 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX1P28360 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX1P28360 SUMO2P20-201ENST00000520803 283 ntBASIC6.37□□□□□ -1.39
MSX1P28360 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX1P28360 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC6.37□□□□□ -1.39
MSX1P28360 RGS4-209ENST00000531057 544 ntTSL 4 BASIC6.37□□□□□ -1.39
MSX1P28360 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX1P28360 HAUS8P1-201ENST00000549005 542 ntBASIC6.37□□□□□ -1.39
MSX1P28360 NPM1P42-201ENST00000560329 862 ntBASIC6.37□□□□□ -1.39
MSX1P28360 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX1P28360 AC010287.1-201ENST00000566916 357 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AP001029.3-201ENST00000588063 596 ntBASIC6.37□□□□□ -1.39
MSX1P28360 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX1P28360 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX1P28360 SNORA11.6-201ENST00000619030 128 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AC007546.1-201ENST00000619452 559 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AL162377.2-201ENST00000624532 337 ntBASIC6.37□□□□□ -1.39
MSX1P28360 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX1P28360 AC140479.4-205ENST00000636339 820 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AC011471.4-201ENST00000638271 216 ntBASIC6.37□□□□□ -1.39
MSX1P28360 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX1P28360 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
MSX1P28360 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 CDY19P-201ENST00000411668 1613 ntBASIC6.36□□□□□ -1.39
MSX1P28360 CDY18P-201ENST00000438294 1609 ntBASIC6.36□□□□□ -1.39
MSX1P28360 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX1P28360 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX1P28360 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 RNU6-522P-201ENST00000364497 107 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RNU6-317P-201ENST00000384031 107 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RNU6-38P-201ENST00000384085 107 ntBASIC6.36□□□□□ -1.39
MSX1P28360 Y_RNA.530-201ENST00000384587 101 ntBASIC6.36□□□□□ -1.39
MSX1P28360 MIR99A-201ENST00000384906 81 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RPL31P52-201ENST00000407532 367 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RPL37P10-201ENST00000412884 288 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RPS15AP12-201ENST00000419498 388 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX1P28360 AC007365.2-201ENST00000428806 458 ntBASIC6.36□□□□□ -1.39
MSX1P28360 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX1P28360 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 RPEP4-201ENST00000437636 602 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AL450996.1-201ENST00000445574 1202 ntBASIC6.36□□□□□ -1.39
MSX1P28360 MRPS31P2-201ENST00000451581 518 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AL390728.3-201ENST00000452704 270 ntBASIC6.36□□□□□ -1.39
MSX1P28360 Y_RNA.653-201ENST00000459091 95 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RNU6-333P-201ENST00000459117 107 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RPS26P11-201ENST00000463445 348 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AC010301.1-201ENST00000473936 355 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RPS26P6-201ENST00000475156 348 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RN7SL502P-201ENST00000481857 290 ntBASIC6.36□□□□□ -1.39
MSX1P28360 UBA52P3-201ENST00000491303 382 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AL117692.1-201ENST00000494283 713 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX1P28360 MTCYBP40-201ENST00000509390 1135 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX1P28360 RNA5SP116-201ENST00000516132 98 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RNA5SP318-201ENST00000516352 92 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RNA5SP92-201ENST00000516437 110 ntBASIC6.36□□□□□ -1.39
MSX1P28360 RNA5SP337-201ENST00000517007 109 ntBASIC6.36□□□□□ -1.39
MSX1P28360 IGKV2-36-201ENST00000519999 223 ntBASIC6.36□□□□□ -1.39
MSX1P28360 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX1P28360 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX1P28360 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX1P28360 AC011447.2-201ENST00000592921 283 ntBASIC6.36□□□□□ -1.39
MSX1P28360 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AL022099.1-201ENST00000604551 712 ntBASIC6.36□□□□□ -1.39
MSX1P28360 MIR6885-201ENST00000612241 66 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AL390240.1-201ENST00000612950 384 ntBASIC6.36□□□□□ -1.39
MSX1P28360 AC015819.1-201ENST00000613588 663 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms