Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP000756.2-201ENST00000624168 2567 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC105074.1-201ENST00000623380 3095 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DMBP28068 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DMBP28068 RPL23AP59-201ENST00000399415 461 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AL049693.1-201ENST00000402760 611 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 RNU4-25P-201ENST00000410569 230 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 NRBF2P2-201ENST00000413087 861 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 JKAMPP1-201ENST00000413804 919 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AL592293.2-201ENST00000422292 996 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC093084.1-201ENST00000424233 687 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 RPL21P133-201ENST00000443666 476 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AL133477.1-201ENST00000457472 514 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC092045.1-201ENST00000495716 1231 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 PRELID3BP5-201ENST00000508612 460 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC106806.2-201ENST00000509365 500 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC006064.5-201ENST00000541782 248 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC107016.1-201ENST00000550463 337 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC115286.1-201ENST00000604298 434 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 GMCL1P2-201ENST00000605230 823 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 MLECP1-201ENST00000615893 709 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AL445363.3-201ENST00000623080 671 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC138907.10-201ENST00000623708 983 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 MIR6830-201ENST00000636015 70 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC008013.2-202ENST00000637965 364 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DMBP28068 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AC095050.2-201ENST00000510748 1458 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 OR10AB1P-202ENST00000641219 1686 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DMBP28068 OR5P1P-201ENST00000299512 925 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 RN7SKP44-201ENST00000363602 316 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 RNA5SP509-201ENST00000364577 119 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DMBP28068 ZNF603P-201ENST00000405613 487 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AP000357.1-201ENST00000409926 1165 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 RNA5SP36-201ENST00000410197 133 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 AMD1P2-201ENST00000412936 992 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 MFSD13B-201ENST00000420133 1290 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 CHIAP3-201ENST00000423668 1133 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 DPY19L1P2-201ENST00000426647 915 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC092017.2-201ENST00000427600 362 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC023141.6-201ENST00000429418 337 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 NFYAP1-201ENST00000431953 972 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 RPS20P1-201ENST00000434853 354 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 CBX1P1-201ENST00000440184 427 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 ELOCP10-201ENST00000440624 327 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 HMGB1P16-201ENST00000447155 540 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 CLIC4P1-201ENST00000453177 535 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC109327.1-201ENST00000471666 403 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 OR8G5-201ENST00000524943 1041 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 UBTFL9-201ENST00000534504 1148 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DMBP28068 CBX3P5-201ENST00000552017 521 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC090515.3-201ENST00000560431 315 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC023575.1-201ENST00000580510 358 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC123786.2-201ENST00000603459 275 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 ELOCP34-201ENST00000604436 327 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC010200.2-201ENST00000605098 235 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 uc_338.32-201ENST00000615087 172 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AL121890.3-201ENST00000618494 516 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC233309.1-201ENST00000619522 751 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AC095038.2-201ENST00000621464 1070 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 AP006248.2-201ENST00000623309 592 ntBASIC3.21□□□□□ -1.9
HLA-DMBP28068 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DMBP28068 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms