Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC3.97□□□□□ -1.77
COL6A3P12111 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A3P12111 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
COL6A3P12111 OR56B2P-201ENST00000317102 954 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 RN7SKP97-201ENST00000410966 333 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 AL024507.1-201ENST00000412741 274 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.97□□□□□ -1.77
COL6A3P12111 AC069240.1-201ENST00000548774 375 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 AC090312.2-201ENST00000582687 378 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.97□□□□□ -1.77
COL6A3P12111 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A3P12111 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A3P12111 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
COL6A3P12111 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.96□□□□□ -1.77
COL6A3P12111 DMD-228ENST00000541735 7080 ntTSL 5 BASIC3.96□□□□□ -1.77
COL6A3P12111 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
COL6A3P12111 IGHV3-29-201ENST00000604817 344 ntBASIC3.96□□□□□ -1.77
COL6A3P12111 AC084036.1-201ENST00000609190 508 ntBASIC3.96□□□□□ -1.77
COL6A3P12111 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.96□□□□□ -1.77
COL6A3P12111 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.77
COL6A3P12111 AC016705.2-202ENST00000559008 6878 ntTSL 3 BASIC3.96□□□□□ -1.77
COL6A3P12111 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.96□□□□□ -1.77
COL6A3P12111 AC021755.1-201ENST00000559747 1447 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A3P12111 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL6A3P12111 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL6A3P12111 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A3P12111 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL6A3P12111 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A3P12111 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.96□□□□□ -1.78
COL6A3P12111 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.96□□□□□ -1.78
COL6A3P12111 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A3P12111 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.96□□□□□ -1.78
COL6A3P12111 AC010149.2-201ENST00000637608 315 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.96□□□□□ -1.78
COL6A3P12111 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL6A3P12111 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
COL6A3P12111 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A3P12111 SNORA44-201ENST00000384584 132 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 RPL7P60-201ENST00000397636 735 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.96□□□□□ -1.78
COL6A3P12111 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A3P12111 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.96□□□□□ -1.78
COL6A3P12111 DDX39BP2-208ENST00000453923 258 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 VN1R104P-201ENST00000505115 1009 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 AC087369.1-201ENST00000520775 996 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.96□□□□□ -1.78
COL6A3P12111 AL121594.4-201ENST00000556211 1196 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 MRPS21P9-201ENST00000571150 257 ntBASIC3.96□□□□□ -1.78
COL6A3P12111 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL6A3P12111 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
COL6A3P12111 THAP12P5-201ENST00000405864 2275 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
COL6A3P12111 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL6A3P12111 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL6A3P12111 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL6A3P12111 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
COL6A3P12111 AC009779.8-201ENST00000641684 4384 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL6A3P12111 MIR422A-201ENST00000362286 90 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 RNU1-140P-201ENST00000365040 165 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 BX842559.1-201ENST00000419615 532 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.95□□□□□ -1.78
COL6A3P12111 AC128716.1-201ENST00000475129 166 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC3.95□□□□□ -1.78
COL6A3P12111 AC025627.2-201ENST00000576220 160 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 HMGB2P1-201ENST00000591146 634 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.95□□□□□ -1.78
COL6A3P12111 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.95□□□□□ -1.78
COL6A3P12111 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
COL6A3P12111 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
COL6A3P12111 SNORD9-201ENST00000362566 104 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 SNORD17-201ENST00000390930 237 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 GSTA8P-201ENST00000404253 637 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
COL6A3P12111 AC006511.1-201ENST00000470614 315 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 RPL5P12-201ENST00000477071 851 ntBASIC3.95□□□□□ -1.78
COL6A3P12111 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.95□□□□□ -1.78
COL6A3P12111 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.95□□□□□ -1.78
COL6A3P12111 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC3.95□□□□□ -1.78
COL6A3P12111 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL6A3P12111 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A3P12111 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC3.94□□□□□ -1.78
COL6A3P12111 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 AC123769.2-201ENST00000624332 5984 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A3P12111 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A3P12111 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.94□□□□□ -1.78
COL6A3P12111 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL6A3P12111 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL6A3P12111 AC010329.1-201ENST00000593903 8328 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 OSTCP5-201ENST00000425293 453 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 RPL21P112-201ENST00000434403 463 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.94□□□□□ -1.78
COL6A3P12111 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.94□□□□□ -1.78
COL6A3P12111 AC090686.1-201ENST00000481577 749 ntBASIC3.94□□□□□ -1.78
COL6A3P12111 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC3.94□□□□□ -1.78
COL6A3P12111 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC3.94□□□□□ -1.78
COL6A3P12111 AL121603.1-201ENST00000553815 142 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms