Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SDC3O75056 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.38□□□□□ -1.71
SDC3O75056 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.38□□□□□ -1.71
SDC3O75056 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SDC3O75056 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SDC3O75056 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SDC3O75056 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SDC3O75056 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SDC3O75056 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.38□□□□□ -1.71
SDC3O75056 AC093535.2-201ENST00000624769 2326 ntBASIC4.38□□□□□ -1.71
SDC3O75056 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC3O75056 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC3O75056 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
SDC3O75056 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC3O75056 CPHL1P-201ENST00000461341 3407 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AL445437.1-201ENST00000623157 3087 ntBASIC4.37□□□□□ -1.71
SDC3O75056 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SDC3O75056 MIR383-201ENST00000362257 73 ntBASIC4.37□□□□□ -1.71
SDC3O75056 RNA5SP388-201ENST00000362584 119 ntBASIC4.37□□□□□ -1.71
SDC3O75056 RNU1-132P-201ENST00000364300 164 ntBASIC4.37□□□□□ -1.71
SDC3O75056 RNA5SP366-201ENST00000365454 123 ntBASIC4.37□□□□□ -1.71
SDC3O75056 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SDC3O75056 RNU6-40P-201ENST00000384254 107 ntBASIC4.37□□□□□ -1.71
SDC3O75056 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SDC3O75056 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC105402.1-201ENST00000413336 545 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC3O75056 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC3O75056 CKS1BP6-201ENST00000424932 240 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC3O75056 OR4C10P-201ENST00000434991 931 ntBASIC4.37□□□□□ -1.71
SDC3O75056 MTND2P21-201ENST00000436242 1042 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC3O75056 GEMIN8P3-201ENST00000445417 720 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.37□□□□□ -1.71
SDC3O75056 RHEBP2-201ENST00000450289 600 ntBASIC4.37□□□□□ -1.71
SDC3O75056 DHFRP3-201ENST00000455595 559 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC007537.2-201ENST00000472093 511 ntBASIC4.37□□□□□ -1.71
SDC3O75056 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC3O75056 MTND6P6-201ENST00000478031 263 ntBASIC4.37□□□□□ -1.71
SDC3O75056 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC3O75056 UBA52P3-201ENST00000491303 382 ntBASIC4.37□□□□□ -1.71
SDC3O75056 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.37□□□□□ -1.71
SDC3O75056 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC3O75056 AC108475.1-201ENST00000507880 950 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC021146.3-201ENST00000511911 260 ntBASIC4.37□□□□□ -1.71
SDC3O75056 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC3O75056 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SDC3O75056 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC3O75056 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC3O75056 AL049870.4-201ENST00000555741 486 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.37□□□□□ -1.71
SDC3O75056 AC090515.3-201ENST00000560431 315 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC106785.1-201ENST00000565935 262 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC113403.1-201ENST00000604910 193 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AL591034.3-201ENST00000605511 685 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC3O75056 AC007342.8-201ENST00000623278 678 ntBASIC4.37□□□□□ -1.71
SDC3O75056 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC3O75056 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SDC3O75056 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SDC3O75056 MTND4P21-201ENST00000453886 1357 ntBASIC4.37□□□□□ -1.71
SDC3O75056 AL355852.1-201ENST00000454081 1771 ntBASIC4.37□□□□□ -1.71
SDC3O75056 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
SDC3O75056 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC3O75056 AL133268.1-201ENST00000405676 1401 ntBASIC4.37□□□□□ -1.71
SDC3O75056 CASC19-206ENST00000641028 1430 ntBASIC4.37□□□□□ -1.71
SDC3O75056 DDX18P3-201ENST00000404856 2007 ntBASIC4.36□□□□□ -1.71
SDC3O75056 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.36□□□□□ -1.71
SDC3O75056 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SDC3O75056 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.36□□□□□ -1.71
SDC3O75056 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC3O75056 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC3O75056 RPS27AP11-201ENST00000402798 447 ntBASIC4.36□□□□□ -1.71
SDC3O75056 Z86062.1-201ENST00000406773 777 ntBASIC4.36□□□□□ -1.71
SDC3O75056 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC3O75056 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SDC3O75056 AC009965.2-201ENST00000425328 970 ntBASIC4.36□□□□□ -1.71
SDC3O75056 NPM1P24-201ENST00000428039 894 ntBASIC4.36□□□□□ -1.71
SDC3O75056 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC3O75056 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC3O75056 AC012671.1-201ENST00000451912 203 ntBASIC4.36□□□□□ -1.71
SDC3O75056 EIF2S2P5-201ENST00000457635 968 ntBASIC4.36□□□□□ -1.71
SDC3O75056 AC092691.2-201ENST00000461787 803 ntBASIC4.36□□□□□ -1.71
SDC3O75056 AC053481.1-201ENST00000467217 306 ntBASIC4.36□□□□□ -1.71
SDC3O75056 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC3O75056 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
SDC3O75056 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.36□□□□□ -1.71
SDC3O75056 MTND2P31-201ENST00000512602 616 ntBASIC4.36□□□□□ -1.71
SDC3O75056 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.36□□□□□ -1.71
SDC3O75056 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SDC3O75056 AP003730.1-201ENST00000524605 285 ntBASIC4.36□□□□□ -1.71
SDC3O75056 TRAV8-5-201ENST00000537369 341 ntBASIC4.36□□□□□ -1.71
SDC3O75056 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.36□□□□□ -1.71
SDC3O75056 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.36□□□□□ -1.71
SDC3O75056 MTCO3P22-201ENST00000603219 784 ntBASIC4.36□□□□□ -1.71
SDC3O75056 CR589904.2-201ENST00000612533 440 ntBASIC4.36□□□□□ -1.71
SDC3O75056 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC3O75056 AL023881.1-201ENST00000621088 301 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms