Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC104662.1-201ENST00000604448 511 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AC005344.1-201ENST00000613391 459 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AL359757.2-201ENST00000624309 274 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 AP005264.7-201ENST00000625003 745 ntBASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SHANK3Q9BYB0 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 RNA5SP267-201ENST00000364893 126 ntBASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 U3.26-201ENST00000391236 204 ntBASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 Z74696.2-201ENST00000436514 498 ntBASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 FABP3P2-201ENST00000453169 399 ntBASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 CYCSP53-201ENST00000455540 265 ntBASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 MIR3922-201ENST00000585192 84 ntBASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 AC107993.1-201ENST00000591343 684 ntBASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 AL645927.2-201ENST00000618350 349 ntBASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SHANK3Q9BYB0 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 HMGN2P27-201ENST00000427352 270 ntBASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 SETP14-201ENST00000497538 873 ntBASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 MTND1P6-201ENST00000523621 946 ntBASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 AC009852.2-201ENST00000567898 485 ntBASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 AC008759.1-201ENST00000589783 983 ntBASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 AL391497.1-201ENST00000608671 547 ntBASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 AC243654.2-201ENST00000612843 443 ntBASIC5.15□□□□□ -1.58
SHANK3Q9BYB0 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
SHANK3Q9BYB0 AL672167.1-205ENST00000641112 3080 ntBASIC5.15□□□□□ -1.59
SHANK3Q9BYB0 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SHANK3Q9BYB0 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
SHANK3Q9BYB0 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 SNORD3H-201ENST00000384486 214 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC006517.1-201ENST00000480485 328 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC100770.1-201ENST00000532310 322 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC007599.1-201ENST00000568688 1174 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AL583832.1-201ENST00000603227 784 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC090246.1-201ENST00000616499 426 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC023509.5-201ENST00000617434 807 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 SLC25A36P1-201ENST00000590111 465 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 AC079684.1-201ENST00000621405 437 ntBASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SHANK3Q9BYB0 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 HSPD1P11-201ENST00000508643 1702 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 MTND4LP20-201ENST00000402379 270 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 PGBD4P8-201ENST00000412993 562 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 RPS29P4-201ENST00000414733 161 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 AC004448.2-201ENST00000422360 586 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 USP9YP36-201ENST00000424581 829 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 USP9YP31-201ENST00000431405 881 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 AC233982.1-201ENST00000451247 436 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 AL136126.1-201ENST00000473603 402 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 AC017015.1-201ENST00000477387 286 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 CYCSP30-201ENST00000546447 172 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 AC104984.5-201ENST00000586878 94 ntBASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHANK3Q9BYB0 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms