Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 Y_RNA.169-201ENST00000363745 96 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 RNU4-92P-201ENST00000363783 136 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 MIR195-201ENST00000385194 87 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 SNORA40.2-201ENST00000390847 128 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AP000580.1-201ENST00000404439 358 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AL133388.1-201ENST00000404509 287 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AL035079.1-201ENST00000405210 287 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AL390316.1-201ENST00000406279 553 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 ELOCP9-201ENST00000418624 239 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC114814.2-201ENST00000419195 485 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 RPL21P43-201ENST00000425440 472 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 AL035551.1-201ENST00000446931 348 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 BX842559.2-201ENST00000451418 605 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 RPL7AP52-201ENST00000458096 790 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC069528.1-202ENST00000482888 637 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AC058823.1-201ENST00000485315 474 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA1P49639 AC010486.2-201ENST00000505572 483 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC027308.1-201ENST00000517993 110 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA1P49639 IGLVIV-53-201ENST00000520107 367 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AP002812.4-201ENST00000532139 286 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 YWHABP2-201ENST00000540201 713 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC044913.1-201ENST00000557200 430 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC008638.3-201ENST00000603341 463 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AL499605.1-201ENST00000604628 403 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AP000255.1-201ENST00000610276 676 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA1P49639 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 MIR6778-201ENST00000617912 73 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA1P49639 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA1P49639 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 AF001550.2-201ENST00000636643 217 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA1P49639 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA1P49639 CASC19-206ENST00000641028 1430 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA1P49639 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA1P49639 AC000367.1-201ENST00000452711 1766 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA1P49639 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA1P49639 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA1P49639 MAPK10-304ENST00000641341 3984 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXA1P49639 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA1P49639 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.19□□□□□ -1.74
HOXA1P49639 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXA1P49639 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA1P49639 SNORD116-2-201ENST00000384274 95 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 RNA5SP122-201ENST00000384457 108 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 SNORD116-6-201ENST00000384711 96 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 SNORD96B-201ENST00000386148 79 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 SFR1P1-201ENST00000403720 688 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 AL590084.1-201ENST00000407885 387 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 RN7SKP240-201ENST00000410583 375 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXA1P49639 AC107081.1-201ENST00000414975 361 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA1P49639 AC013429.2-201ENST00000418798 781 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA1P49639 RPL7P57-201ENST00000423238 740 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 AC115283.1-201ENST00000427353 400 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXA1P49639 FGF12-202ENST00000430714 603 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXA1P49639 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA1P49639 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA1P49639 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXA1P49639 AC104634.1-201ENST00000452720 462 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 RPS27AP2-201ENST00000457576 465 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.19□□□□□ -1.74
HOXA1P49639 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXA1P49639 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA1P49639 AC146944.2-203ENST00000502493 354 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA1P49639 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXA1P49639 AC139495.1-202ENST00000513164 354 ntBASIC4.19□□□□□ -1.74
HOXA1P49639 RNU6-416P-201ENST00000516265 103 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms