Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC5.31□□□□□ -1.56
MSX2P35548 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 RNU6-506P-201ENST00000516553 94 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX2P35548 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.31□□□□□ -1.56
MSX2P35548 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC5.31□□□□□ -1.56
MSX2P35548 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 AL121579.1-201ENST00000555129 305 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.31□□□□□ -1.56
MSX2P35548 SNORA59B-202ENST00000578183 701 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC5.31□□□□□ -1.56
MSX2P35548 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.31□□□□□ -1.56
MSX2P35548 AC010487.1-201ENST00000594408 1172 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC108738.1-201ENST00000603703 237 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 AL390816.3-201ENST00000604527 1066 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC005962.2-201ENST00000611427 652 ntBASIC5.31□□□□□ -1.56
MSX2P35548 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.31□□□□□ -1.56
MSX2P35548 AL355480.1-201ENST00000629041 99 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 U6.107-201ENST00000637108 79 ntBASIC5.31□□□□□ -1.56
MSX2P35548 LINC01739-205ENST00000641890 573 ntBASIC5.31□□□□□ -1.56
MSX2P35548 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.31□□□□□ -1.56
MSX2P35548 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 MAPK6PS3-201ENST00000403865 2162 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.3□□□□□ -1.56
MSX2P35548 CASC19-284ENST00000642142 1868 ntBASIC5.3□□□□□ -1.56
MSX2P35548 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.3□□□□□ -1.56
MSX2P35548 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX2P35548 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.3□□□□□ -1.56
MSX2P35548 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 TMSB4XP2-201ENST00000335179 210 ntBASIC5.3□□□□□ -1.56
MSX2P35548 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 RNU6-452P-201ENST00000384406 107 ntBASIC5.3□□□□□ -1.56
MSX2P35548 PPIAP9-201ENST00000403866 498 ntBASIC5.3□□□□□ -1.56
MSX2P35548 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AL035422.1-201ENST00000414193 397 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AC245052.5-201ENST00000416320 649 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.3□□□□□ -1.56
MSX2P35548 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 OR8F1P-201ENST00000425243 930 ntBASIC5.3□□□□□ -1.56
MSX2P35548 USP9YP18-201ENST00000425912 695 ntBASIC5.3□□□□□ -1.56
MSX2P35548 DPY19L1P2-201ENST00000426647 915 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.3□□□□□ -1.56
MSX2P35548 RPL7P56-201ENST00000429441 717 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX2P35548 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.3□□□□□ -1.56
MSX2P35548 SNRPEP8-201ENST00000442866 260 ntBASIC5.3□□□□□ -1.56
MSX2P35548 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.3□□□□□ -1.56
MSX2P35548 DNAJC19P1-201ENST00000455312 319 ntBASIC5.3□□□□□ -1.56
MSX2P35548 OR9M1P-201ENST00000459641 921 ntBASIC5.3□□□□□ -1.56
MSX2P35548 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.3□□□□□ -1.56
MSX2P35548 AP002453.1-201ENST00000492327 668 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 RNU6-1225P-201ENST00000516336 65 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 EIF4A2P5-201ENST00000529914 499 ntBASIC5.3□□□□□ -1.56
MSX2P35548 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
MSX2P35548 AP004247.1-201ENST00000531556 1289 ntBASIC5.3□□□□□ -1.56
MSX2P35548 HMGB1P42-201ENST00000532126 553 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX2P35548 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.3□□□□□ -1.56
MSX2P35548 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX2P35548 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX2P35548 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.3□□□□□ -1.56
MSX2P35548 AC018552.1-201ENST00000562099 811 ntBASIC5.3□□□□□ -1.56
MSX2P35548 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX2P35548 MIR7853-201ENST00000584820 132 ntBASIC5.3□□□□□ -1.56
MSX2P35548 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX2P35548 COX6CP7-201ENST00000597056 208 ntBASIC5.3□□□□□ -1.56
MSX2P35548 VN1R92P-201ENST00000598511 928 ntBASIC5.3□□□□□ -1.56
MSX2P35548 AC090970.3-201ENST00000612566 866 ntBASIC5.3□□□□□ -1.56
MSX2P35548 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.3□□□□□ -1.56
MSX2P35548 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.3□□□□□ -1.56
MSX2P35548 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.3□□□□□ -1.56
MSX2P35548 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX2P35548 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX2P35548 AC093849.1-201ENST00000563631 2209 ntBASIC5.29□□□□□ -1.56
MSX2P35548 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX2P35548 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms