Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC087385.3-201ENST00000620477 187 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AC078883.4-201ENST00000623218 367 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC073869.10-201ENST00000642016 354 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMARCA1P28370 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMARCA1P28370 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SMARCA1P28370 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.7□□□□□ -1.5
SMARCA1P28370 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
SMARCA1P28370 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SMARCA1P28370 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.69□□□□□ -1.5
SMARCA1P28370 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SMARCA1P28370 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SMARCA1P28370 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SMARCA1P28370 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.69□□□□□ -1.5
SMARCA1P28370 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SMARCA1P28370 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
SMARCA1P28370 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SMARCA1P28370 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC017079.1-201ENST00000333650 415 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SMARCA1P28370 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SMARCA1P28370 VDAC2P1-201ENST00000399358 958 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.69□□□□□ -1.5
SMARCA1P28370 ELOCP9-201ENST00000418624 239 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC104333.2-201ENST00000422630 192 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 ZDHHC20P2-201ENST00000424108 429 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AL590762.4-201ENST00000425885 253 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SMARCA1P28370 FTH1P16-201ENST00000435241 552 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC005002.1-201ENST00000447458 540 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 OR52J1P-201ENST00000450596 932 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 RPL23AP44-201ENST00000482216 473 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC034244.1-201ENST00000507687 207 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC117522.2-201ENST00000510049 657 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.69□□□□□ -1.5
SMARCA1P28370 BRD9P1-201ENST00000529855 560 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AGGF1P6-201ENST00000569213 976 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.69□□□□□ -1.5
SMARCA1P28370 ZNF92P3-201ENST00000596594 954 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC125494.3-201ENST00000602759 455 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC119501.1-201ENST00000603646 475 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC011453.2-201ENST00000603737 729 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AL049539.1-201ENST00000611964 459 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 uc_338.9-201ENST00000617424 182 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC024595.1-201ENST00000623088 387 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AP003399.1-201ENST00000637534 361 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.69□□□□□ -1.5
SMARCA1P28370 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SMARCA1P28370 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SMARCA1P28370 PCAT14-202ENST00000627127 3935 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SMARCA1P28370 DDX18P4-201ENST00000511690 1966 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 AC092079.1-201ENST00000558620 1985 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC008758.3-201ENST00000507003 1829 ntBASIC5.69□□□□□ -1.5
SMARCA1P28370 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.69□□□□□ -1.5
SMARCA1P28370 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SMARCA1P28370 AC005261.4-201ENST00000600047 1385 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SMARCA1P28370 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SMARCA1P28370 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SMARCA1P28370 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SMARCA1P28370 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC004817.4-201ENST00000602396 3625 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SMARCA1P28370 SNORA62.2-201ENST00000364672 152 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 RNA5SP87-201ENST00000384155 118 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 SNORD116-8-201ENST00000384365 95 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.68□□□□□ -1.5
SMARCA1P28370 FCF1P5-201ENST00000406490 482 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC114755.2-201ENST00000413520 361 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC5.68□□□□□ -1.5
SMARCA1P28370 LINC01881-201ENST00000416103 412 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AC013429.2-201ENST00000418798 781 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC092473.1-201ENST00000441098 221 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.68□□□□□ -1.5
SMARCA1P28370 AC233982.1-201ENST00000451247 436 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 NPM1P13-201ENST00000452663 865 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AL645937.3-201ENST00000453647 936 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 MRPL35P4-201ENST00000453682 566 ntBASIC5.68□□□□□ -1.5
SMARCA1P28370 AC069528.1-202ENST00000482888 637 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms