Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC023509.5-201ENST00000617434 807 ntBASIC4□□□□□ -1.77
COL6A3P12111 SPATA31D2P-201ENST00000429999 4388 ntBASIC4□□□□□ -1.77
COL6A3P12111 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4□□□□□ -1.77
COL6A3P12111 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 AL136360.1-201ENST00000503377 1900 ntBASIC4□□□□□ -1.77
COL6A3P12111 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 PCNPP4-201ENST00000414817 517 ntBASIC4□□□□□ -1.77
COL6A3P12111 Z97055.1-201ENST00000419730 712 ntBASIC4□□□□□ -1.77
COL6A3P12111 AF228730.2-201ENST00000438784 848 ntBASIC4□□□□□ -1.77
COL6A3P12111 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4□□□□□ -1.77
COL6A3P12111 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC4□□□□□ -1.77
COL6A3P12111 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC4□□□□□ -1.77
COL6A3P12111 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 DOCK11P1-201ENST00000553480 5932 ntBASIC4□□□□□ -1.77
COL6A3P12111 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4□□□□□ -1.77
COL6A3P12111 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC4□□□□□ -1.77
COL6A3P12111 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4□□□□□ -1.77
COL6A3P12111 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 AL603825.1-201ENST00000438481 80 ntBASIC4□□□□□ -1.77
COL6A3P12111 RN7SL432P-201ENST00000484057 298 ntBASIC4□□□□□ -1.77
COL6A3P12111 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4□□□□□ -1.77
COL6A3P12111 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4□□□□□ -1.77
COL6A3P12111 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4□□□□□ -1.77
COL6A3P12111 AC005344.1-201ENST00000613391 459 ntBASIC4□□□□□ -1.77
COL6A3P12111 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
COL6A3P12111 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC3.99□□□□□ -1.77
COL6A3P12111 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.99□□□□□ -1.77
COL6A3P12111 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A3P12111 RNA5SP175-201ENST00000364275 119 ntBASIC3.99□□□□□ -1.77
COL6A3P12111 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.99□□□□□ -1.77
COL6A3P12111 ATP5JP1-201ENST00000431631 322 ntBASIC3.99□□□□□ -1.77
COL6A3P12111 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.99□□□□□ -1.77
COL6A3P12111 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.99□□□□□ -1.77
COL6A3P12111 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A3P12111 NBPF8-201ENST00000583271 5330 ntBASIC3.99□□□□□ -1.77
COL6A3P12111 AC138393.1-206ENST00000540997 1886 ntBASIC3.99□□□□□ -1.77
COL6A3P12111 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC3.99□□□□□ -1.77
COL6A3P12111 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A3P12111 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A3P12111 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
COL6A3P12111 DHX9P1-201ENST00000436565 3076 ntBASIC3.99□□□□□ -1.77
COL6A3P12111 RN7SKP167-201ENST00000411047 285 ntBASIC3.99□□□□□ -1.77
COL6A3P12111 COX5BP7-201ENST00000414780 274 ntBASIC3.99□□□□□ -1.77
COL6A3P12111 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC3.99□□□□□ -1.77
COL6A3P12111 NRBF2P5-201ENST00000603087 788 ntBASIC3.99□□□□□ -1.77
COL6A3P12111 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
COL6A3P12111 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
COL6A3P12111 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A3P12111 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
COL6A3P12111 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A3P12111 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC3.98□□□□□ -1.77
COL6A3P12111 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL6A3P12111 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
COL6A3P12111 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.98□□□□□ -1.77
COL6A3P12111 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A3P12111 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A3P12111 SNX6P1-201ENST00000601728 1224 ntBASIC3.98□□□□□ -1.77
COL6A3P12111 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A3P12111 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
COL6A3P12111 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
COL6A3P12111 PRNCR1-201ENST00000635449 12727 ntBASIC3.98□□□□□ -1.77
COL6A3P12111 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A3P12111 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A3P12111 MIR1179-201ENST00000408703 91 ntBASIC3.98□□□□□ -1.77
COL6A3P12111 RPL35AP21-201ENST00000437667 333 ntBASIC3.98□□□□□ -1.77
COL6A3P12111 AC083863.1-201ENST00000438811 231 ntBASIC3.98□□□□□ -1.77
COL6A3P12111 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A3P12111 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.98□□□□□ -1.77
COL6A3P12111 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A3P12111 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC3.98□□□□□ -1.77
COL6A3P12111 AL049781.1-201ENST00000623195 3585 ntBASIC3.98□□□□□ -1.77
COL6A3P12111 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL6A3P12111 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A3P12111 QTRT1P1-201ENST00000604344 1078 ntBASIC3.98□□□□□ -1.77
COL6A3P12111 AL354976.1-201ENST00000613843 387 ntBASIC3.98□□□□□ -1.77
COL6A3P12111 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.97□□□□□ -1.77
COL6A3P12111 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
COL6A3P12111 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.97□□□□□ -1.77
COL6A3P12111 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A3P12111 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC3.97□□□□□ -1.77
COL6A3P12111 AC100778.3-201ENST00000580060 1750 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 BX323014.1-201ENST00000412876 237 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.97□□□□□ -1.77
COL6A3P12111 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
COL6A3P12111 RNA5SP341-201ENST00000516261 117 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 snoU109.6-201ENST00000516831 118 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 UBE2NP1-201ENST00000545592 458 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 AL352979.3-201ENST00000553515 247 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.97□□□□□ -1.77
COL6A3P12111 AC093732.2-201ENST00000607950 274 ntBASIC3.97□□□□□ -1.77
COL6A3P12111 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A3P12111 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A3P12111 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms