Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 OR2BH1P-201ENST00000608850 864 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC5.99□□□□□ -1.45
COL6A1P12109 AC107075.1-201ENST00000613695 314 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AC025588.4-201ENST00000615802 908 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AC012414.7-202ENST00000622705 1090 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.99□□□□□ -1.45
COL6A1P12109 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.99□□□□□ -1.45
COL6A1P12109 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC5.99□□□□□ -1.45
COL6A1P12109 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 AC007996.1-201ENST00000620414 2821 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
COL6A1P12109 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
COL6A1P12109 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
COL6A1P12109 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 AL158152.1-201ENST00000602652 1435 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A1P12109 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 AC005725.1-201ENST00000577346 2607 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A1P12109 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 Y_RNA.6-201ENST00000362350 114 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 Y_RNA.553-201ENST00000384670 102 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 Y_RNA.560-201ENST00000384689 102 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 AL663109.1-201ENST00000411498 844 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 GJA6P-201ENST00000415117 1042 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 AC019050.1-201ENST00000418508 492 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A1P12109 AC023128.2-201ENST00000420880 1223 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 TMEM183AP1-205ENST00000432739 290 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 PRPF38AP2-201ENST00000438179 851 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 MTATP6P23-201ENST00000440153 476 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 MTCYBP3-201ENST00000445588 1137 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 EIF4A1P11-201ENST00000451239 222 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A1P12109 OR5G4P-201ENST00000525251 760 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A1P12109 AC009117.1-201ENST00000563948 554 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 AC006362.1-201ENST00000567392 174 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 AC005341.1-201ENST00000571086 708 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 ISCA1P3-201ENST00000577104 373 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 AC073569.3-201ENST00000619055 682 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 VN1R7P-201ENST00000619242 903 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 AC007342.8-201ENST00000623278 678 ntBASIC5.98□□□□□ -1.45
COL6A1P12109 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A1P12109 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A1P12109 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
COL6A1P12109 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A1P12109 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.97□□□□□ -1.45
COL6A1P12109 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
COL6A1P12109 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
COL6A1P12109 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.97□□□□□ -1.45
COL6A1P12109 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A1P12109 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
COL6A1P12109 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A1P12109 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.97□□□□□ -1.45
COL6A1P12109 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A1P12109 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A1P12109 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
COL6A1P12109 Y_RNA.3-201ENST00000362331 103 ntBASIC5.97□□□□□ -1.45
COL6A1P12109 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.97□□□□□ -1.45
COL6A1P12109 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A1P12109 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A1P12109 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A1P12109 RNU6-549P-201ENST00000384433 107 ntBASIC5.97□□□□□ -1.45
COL6A1P12109 SNORA68.2-201ENST00000391263 128 ntBASIC5.97□□□□□ -1.45
COL6A1P12109 AL031577.2-201ENST00000404133 280 ntBASIC5.97□□□□□ -1.45
COL6A1P12109 TANK-206ENST00000406287 875 ntTSL 5 BASIC5.97□□□□□ -1.45
COL6A1P12109 AL512430.2-201ENST00000406786 339 ntBASIC5.97□□□□□ -1.45
COL6A1P12109 P2RY10P2-201ENST00000416730 913 ntBASIC5.97□□□□□ -1.45
COL6A1P12109 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.97□□□□□ -1.45
COL6A1P12109 RPL12P17-201ENST00000432393 498 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms