Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HOXD4P09016 RNA5SP447-201ENST00000363749 119 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 MIR93-201ENST00000385024 80 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 MIR620-201ENST00000385232 95 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD4P09016 CEACAMP8-201ENST00000413902 580 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD4P09016 OR6K4P-201ENST00000423179 955 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD4P09016 RPL12P34-201ENST00000424532 479 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL732292.1-201ENST00000426692 226 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD4P09016 AC022022.1-201ENST00000430304 178 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD4P09016 RHEBP2-201ENST00000450289 600 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXD4P09016 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 AC083829.1-201ENST00000503756 657 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 MTCO1P31-201ENST00000506355 492 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AC119751.4-201ENST00000507498 357 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD4P09016 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 RNA5SP154-201ENST00000516193 111 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 RN7SKP21-201ENST00000516503 220 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD4P09016 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 AC069240.1-201ENST00000548774 375 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXD4P09016 AC093510.2-201ENST00000562820 896 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXD4P09016 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 MTCO2P22-201ENST00000603246 681 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AC008638.3-201ENST00000603341 463 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL133338.2-201ENST00000604292 736 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AC096553.1-201ENST00000605169 829 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AC004775.1-201ENST00000607389 753 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AC018645.2-201ENST00000609151 472 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL391834.2-201ENST00000609982 546 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AC005962.2-201ENST00000611427 652 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AC016957.2-201ENST00000616998 848 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 MIR7154-201ENST00000620673 73 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 AL049777.1-201ENST00000622740 518 ntBASIC4.21□□□□□ -1.74
HOXD4P09016 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXD4P09016 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HOXD4P09016 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.21□□□□□ -1.74
HOXD4P09016 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXD4P09016 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD4P09016 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 AC108467.2-201ENST00000617640 1597 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXD4P09016 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 AC107068.1-201ENST00000563286 4218 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 DHX9P1-201ENST00000436565 3076 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 FAM3C2-201ENST00000312214 681 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
HOXD4P09016 RNA5SP52-201ENST00000362448 134 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 RNU6-609P-201ENST00000365459 107 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AL353692.2-201ENST00000407054 335 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 RNU4-25P-201ENST00000410569 230 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD4P09016 UQCRBP1-201ENST00000421129 336 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 CKS1BP6-201ENST00000424932 240 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 UBE2D3P3-201ENST00000426992 425 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AC004975.1-201ENST00000428733 208 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AL606490.7-201ENST00000433136 191 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AC007563.3-201ENST00000433233 371 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD4P09016 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD4P09016 MTND2P6-201ENST00000455337 1030 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD4P09016 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AC090142.1-201ENST00000465776 462 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXD4P09016 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXD4P09016 SNORA76.2-201ENST00000517095 137 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AC103833.1-201ENST00000517442 172 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 MTCYBP19-201ENST00000517463 1124 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 HMGB1P46-201ENST00000520062 610 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD4P09016 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
HOXD4P09016 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD4P09016 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD4P09016 AL049830.4-201ENST00000555149 351 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXD4P09016 AC104072.1-201ENST00000568817 668 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 MTND6P33-201ENST00000571794 183 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXD4P09016 AC023813.4-201ENST00000607580 580 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 AL355816.2-201ENST00000610049 647 ntBASIC4.2□□□□□ -1.74
HOXD4P09016 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms