Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 NAP1L4P1-201ENST00000319092 1157 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 OR56A4-201ENST00000330728 1209 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 RN7SKP78-201ENST00000364711 318 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 RN7SKP226-201ENST00000364912 300 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 Y_RNA.450-201ENST00000384198 113 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 Y_RNA.453-201ENST00000384223 109 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 RNA5SP91-201ENST00000390902 119 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AL035419.1-201ENST00000397037 564 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 FAT1P1-201ENST00000406588 507 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 EIF5AP4-201ENST00000441206 465 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 MTCO2P25-201ENST00000447065 681 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 CST12P-201ENST00000457644 362 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC022336.1-201ENST00000475510 337 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AHI1-208ENST00000488690 712 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 MTHFD2P4-201ENST00000515074 1025 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 RN7SKP298-201ENST00000515950 94 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 RNA5SP340-201ENST00000517132 107 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 OR5AK1P-201ENST00000524837 922 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC091078.2-201ENST00000557145 559 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 CYCSP38-201ENST00000559840 322 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 MIR4433B-201ENST00000581329 102 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC135507.2-201ENST00000612443 309 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 MIR7109-201ENST00000613748 65 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 AC015689.2-201ENST00000528172 1738 ntBASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
CCDC39Q9UFE4 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC117409.1-201ENST00000470499 1310 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 Y_RNA.263-201ENST00000364659 114 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 RNU1-136P-201ENST00000384181 164 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 RPS7P13-201ENST00000413955 498 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 RNGTTP1-201ENST00000420965 728 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 OR10T1P-201ENST00000424327 947 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC233728.2-201ENST00000425348 757 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC008850.1-201ENST00000427546 362 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC069154.1-201ENST00000432914 542 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 VN1R10P-201ENST00000447106 875 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 RPL21P134-201ENST00000453468 483 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 BX322784.1-201ENST00000455793 1077 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC004129.2-201ENST00000457229 287 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC109462.1-201ENST00000491087 368 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 RN7SL193P-201ENST00000491708 276 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 RN7SL57P-201ENST00000493687 290 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 SUMO2P4-201ENST00000504193 276 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC147055.4-201ENST00000504399 745 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC097173.1-201ENST00000505862 819 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 IMPA1P1-201ENST00000510718 842 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 PCNAP4-201ENST00000532690 730 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms