Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 Y_RNA.801-201ENST00000619005 101 ntBASIC6.04□□□□□ -1.44
SSU72Q9NP77 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.04□□□□□ -1.44
SSU72Q9NP77 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
SSU72Q9NP77 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.04□□□□□ -1.44
SSU72Q9NP77 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
SSU72Q9NP77 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SSU72Q9NP77 DNM1P47-203ENST00000571780 12667 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 RNF6P1-201ENST00000444889 1784 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 SNRPEP3-201ENST00000338402 276 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 RNU6-777P-201ENST00000364265 104 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 Y_RNA.460-201ENST00000384255 102 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 Y_RNA.548-201ENST00000384656 105 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 TMSB4XP8-201ENST00000402089 135 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 MIR1302-11-201ENST00000408051 138 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 MIR1302-9-201ENST00000408365 138 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 MIR1302-10-201ENST00000408734 138 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 TMSB4XP6-201ENST00000415187 135 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 GRPEL2P2-201ENST00000421856 670 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 TMSB4XP1-201ENST00000424567 135 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 RPS27AP6-201ENST00000427962 448 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 LSM1P1-201ENST00000438629 273 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AL353803.3-201ENST00000444641 335 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 Z82190.1-201ENST00000454534 490 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 BTF3P5-201ENST00000457252 467 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 CR383656.1-201ENST00000484916 377 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 NPM1P21-201ENST00000513394 762 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AL359212.1-201ENST00000556608 614 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC090774.2-201ENST00000584708 322 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC010928.3-201ENST00000587712 541 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 HMGN1P30-201ENST00000589286 268 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 MIR1302-2-201ENST00000607096 138 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 RNU6-84P-201ENST00000607737 102 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC002550.2-201ENST00000621246 394 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AC090574.1-201ENST00000623186 233 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 CASC19-221ENST00000641309 1382 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SSU72Q9NP77 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.03□□□□□ -1.44
SSU72Q9NP77 AL591135.1-201ENST00000401578 5914 ntBASIC6.03□□□□□ -1.44
SSU72Q9NP77 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.02□□□□□ -1.44
SSU72Q9NP77 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.44
SSU72Q9NP77 AC093671.1-201ENST00000624981 2929 ntBASIC6.02□□□□□ -1.45
SSU72Q9NP77 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SSU72Q9NP77 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SSU72Q9NP77 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
SSU72Q9NP77 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SSU72Q9NP77 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SSU72Q9NP77 ASNSP1-204ENST00000641977 1664 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms