Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DDX18P3-201ENST00000404856 2007 ntBASIC4.79□□□□□ -1.64
PCDH9Q9HC56 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PCDH9Q9HC56 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MFSD8-213ENST00000641134 1327 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 RNU5E-10P-201ENST00000363506 118 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 SNORD56.4-201ENST00000363883 71 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 RNA5SP87-201ENST00000384155 118 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 RNU6-178P-201ENST00000384631 104 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AL603865.2-201ENST00000401679 213 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 RPL5P19-201ENST00000404228 893 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AL591848.1-201ENST00000413092 322 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 RPL21P108-201ENST00000413857 481 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 BX510359.2-201ENST00000417920 305 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AL360081.1-201ENST00000428299 555 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 RPL21P91-201ENST00000429231 479 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MTND2P2-201ENST00000434633 945 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC005154.2-201ENST00000438110 379 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 NPM1P33-201ENST00000438918 872 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MTND1P26-201ENST00000440488 538 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC105233.1-201ENST00000498840 781 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC114322.1-201ENST00000506771 926 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 OR7H2P-201ENST00000513483 306 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 IGHV3-63-201ENST00000518422 341 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 NPM1P35-201ENST00000533043 868 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MTATP6P24-201ENST00000576835 677 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MIR4480-201ENST00000582492 71 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC091178.1-203ENST00000584586 279 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 SLC25A36P1-201ENST00000590111 465 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AP002802.2-201ENST00000605877 235 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AL157392.4-201ENST00000609756 345 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AP004607.9-201ENST00000618202 316 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MIR6730-201ENST00000622213 67 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AP001784.1-201ENST00000624107 428 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 AC132825.7-201ENST00000638744 335 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 UGT2B26P-201ENST00000508672 1613 ntBASIC4.78□□□□□ -1.64
PCDH9Q9HC56 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
PCDH9Q9HC56 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.65
PCDH9Q9HC56 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 VPS35P1-201ENST00000563400 1518 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 RN7SKP103-201ENST00000363848 320 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 RNU4-74P-201ENST00000411280 161 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC115285.1-201ENST00000424879 736 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 FO393419.3-201ENST00000428741 282 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AL035458.1-201ENST00000433096 585 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 CYCSP11-201ENST00000436426 315 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 HMGB3P9-201ENST00000441799 583 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 H2AFZP5-201ENST00000446960 382 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC022431.1-201ENST00000450941 438 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 RN7SL41P-201ENST00000476144 297 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 RPS27AP16-201ENST00000492222 470 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC231760.1-201ENST00000498002 260 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC025459.1-201ENST00000504072 156 ntBASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.77□□□□□ -1.65
PCDH9Q9HC56 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms