Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 OR2BH1P-201ENST00000608850 864 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC015914.2-201ENST00000618167 288 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL035461.2-201ENST00000619201 524 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC022306.3-201ENST00000619930 550 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AP005019.3-201ENST00000620418 560 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC083865.1-201ENST00000636634 831 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 MFSD8-220ENST00000641243 1422 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 OR14L1P-202ENST00000641545 3009 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL445487.1-201ENST00000415694 1580 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC010329.2-201ENST00000595195 2737 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 RN7SKP227-201ENST00000364445 330 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 RNA5SP509-201ENST00000364577 119 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 RNU6-225P-201ENST00000384613 103 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 RNU6-796P-201ENST00000391086 107 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 SNORA68.2-201ENST00000391263 128 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AL590762.2-201ENST00000395798 571 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 RN7SKP222-201ENST00000410651 315 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC010385.1-201ENST00000412374 256 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 VN1R37P-201ENST00000419096 748 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC108463.1-201ENST00000450258 347 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC090142.1-201ENST00000465776 462 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC109327.1-201ENST00000471666 403 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC025164.1-201ENST00000496249 478 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC015795.1-201ENST00000513669 327 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 snoU109.6-201ENST00000516831 118 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC068831.4-201ENST00000556118 109 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC104072.1-201ENST00000568817 668 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC096553.1-201ENST00000605169 829 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC092653.1-201ENST00000608509 531 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC016957.2-201ENST00000616998 848 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AC068831.8-201ENST00000620171 435 ntBASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC3Q9BQI4 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 HSPD1P11-201ENST00000508643 1702 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 CASC19-206ENST00000641028 1430 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 SNORD56.4-201ENST00000363883 71 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 TMBIM7P-201ENST00000418074 855 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 EIF4A1P1-201ENST00000420241 934 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 GAPDHP49-201ENST00000421421 961 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 NPM1P33-201ENST00000438918 872 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 CBX1P1-201ENST00000440184 427 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 YWHAZP2-201ENST00000440317 728 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 ZNF736P11Y-201ENST00000442535 1213 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 ZNF736P12Y-201ENST00000443152 1243 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 ZNF736P4Y-201ENST00000454995 1243 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 NIP7P2-201ENST00000485801 544 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AC007016.1-201ENST00000512110 244 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 RNA5SP464-201ENST00000516251 108 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AP003355.1-201ENST00000518956 587 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AC138701.1-201ENST00000524329 714 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms