Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AC139426.3-201ENST00000605648 2059 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 BMS1P3-201ENST00000372011 932 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AL592291.1-201ENST00000403830 352 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AL078604.1-201ENST00000404609 466 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 S100A11P2-201ENST00000467589 312 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AC138907.10-201ENST00000623708 983 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 BCLAF1P2-201ENST00000624956 2609 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 MTCO1P24-201ENST00000515438 1558 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 RN7SKP186-201ENST00000365371 303 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 RPL7L1P13-201ENST00000511702 739 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 NCAPGP2-201ENST00000557911 754 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 MIR4433B-201ENST00000581329 102 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 SNX6P1-201ENST00000601728 1224 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AC068790.5-201ENST00000602741 355 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AP000542.2-201ENST00000623199 6179 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 OR56B2P-201ENST00000317102 954 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 RNA5SP267-201ENST00000364893 126 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 MIR1911-201ENST00000410783 80 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC079809.1-201ENST00000415468 276 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AL157385.1-201ENST00000446973 268 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 BTF3P5-201ENST00000457252 467 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 RPL21P10-201ENST00000463521 490 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 RN7SKP18-201ENST00000516005 275 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 MIR7106-201ENST00000612419 65 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AL353743.1-202ENST00000431724 1695 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 RAD23BP3-201ENST00000454157 1152 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC006511.1-201ENST00000470614 315 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC128716.1-201ENST00000475129 166 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC090013.1-201ENST00000485147 480 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC090246.1-201ENST00000616499 426 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 AC007823.1-201ENST00000569932 1566 ntBASIC3.78□□□□□ -1.8
VPS13AQ96RL7 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS13AQ96RL7 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 OR10J6P-201ENST00000289731 930 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 RNA5SP97-201ENST00000365006 84 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 AC097713.2-201ENST00000430199 356 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 AC010342.1-201ENST00000514047 877 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 RNA5SP303-201ENST00000516192 130 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 AC091905.2-201ENST00000623143 306 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS13AQ96RL7 SNORA80A-201ENST00000363922 136 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 RNA5SP80-201ENST00000410475 111 ntBASIC3.77□□□□□ -1.81
VPS13AQ96RL7 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms