Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RPL7P1-201ENST00000468161 747 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 RPL7P9-201ENST00000468715 747 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 RN7SL205P-201ENST00000490174 284 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 AC135001.1-201ENST00000544546 283 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC42Q96M95 AC022968.1-201ENST00000567372 442 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 AL161729.3-201ENST00000603533 673 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 AL591424.2-201ENST00000617023 128 ntBASIC4.36□□□□□ -1.71
CCDC42Q96M95 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC42Q96M95 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC008725.1-201ENST00000605123 2263 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC42Q96M95 RNU1-132P-201ENST00000364300 164 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 RNU4-25P-201ENST00000410569 230 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 KCTD9P3-201ENST00000434597 1169 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 HMGB1P16-201ENST00000447155 540 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 RPL35AP28-201ENST00000459730 331 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC099522.1-202ENST00000514718 367 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 MTND2P17-201ENST00000550281 688 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC068831.4-201ENST00000556118 109 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC025627.2-201ENST00000576220 160 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC020914.4-201ENST00000597690 277 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 AC005191.1-201ENST00000603950 358 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 MIR486-1-201ENST00000612171 68 ntBASIC4.35□□□□□ -1.71
CCDC42Q96M95 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC42Q96M95 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC42Q96M95 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC42Q96M95 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC42Q96M95 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC42Q96M95 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC42Q96M95 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC42Q96M95 Z73965.1-201ENST00000623412 2297 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC42Q96M95 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC42Q96M95 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC104297.1-201ENST00000393779 870 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 RPL5P19-201ENST00000404228 893 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 MTND4LP21-201ENST00000415303 295 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AL590139.1-201ENST00000416267 400 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC42Q96M95 CHIAP3-201ENST00000423668 1133 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 COX6B1P7-201ENST00000430845 235 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 AP000936.3-201ENST00000438127 255 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC239809.1-201ENST00000450470 217 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 NDUFS5P3-201ENST00000450668 321 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 RPL10P17-201ENST00000453852 316 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC092691.2-201ENST00000461787 803 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC093720.1-201ENST00000505681 714 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 MIR4715-201ENST00000584117 79 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 MIR5684-201ENST00000585074 65 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC023813.4-201ENST00000607580 580 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 AC083899.2-201ENST00000423285 1376 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 CUL4AP1-201ENST00000514750 1863 ntBASIC4.34□□□□□ -1.71
CCDC42Q96M95 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC42Q96M95 UBE3AP2-201ENST00000429033 2259 ntBASIC4.34□□□□□ -1.72
CCDC42Q96M95 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC42Q96M95 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.34□□□□□ -1.72
CCDC42Q96M95 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC42Q96M95 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC42Q96M95 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC42Q96M95 AL627171.1-201ENST00000618845 1308 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms