Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC010285.3-201ENST00000511668 676 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 CYCSP40-201ENST00000575927 294 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC005242.1-201ENST00000585658 438 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC115085.1-201ENST00000588924 229 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 CCDC58P3-201ENST00000590792 430 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC008782.1-201ENST00000603386 430 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 ARF4P1-201ENST00000605447 541 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 ZYXP1-201ENST00000617638 118 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC034229.5-201ENST00000624258 185 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 ASNSP1-204ENST00000641977 1664 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 GTF2H2B-203ENST00000508065 1432 ntBASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
HDDC3Q8N4P3 AC021146.4-201ENST00000309229 279 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 OR52B1P-201ENST00000316506 909 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AL359837.1-201ENST00000381357 287 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC025750.1-201ENST00000399891 379 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 OR1F12-201ENST00000402365 945 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 ARL4AP5-201ENST00000404372 599 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AL590290.1-201ENST00000405336 380 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 RN7SKP97-201ENST00000410966 333 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC011998.1-201ENST00000433403 117 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 RPL7P31-201ENST00000450192 724 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 RN7SL303P-201ENST00000469773 251 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 RNA5SP249-201ENST00000516127 99 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 RN7SKP141-201ENST00000516167 338 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 IPO5P1-202ENST00000600039 287 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC067959.1-201ENST00000604334 379 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC015914.2-201ENST00000618167 288 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC000123.2-201ENST00000623124 461 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC008785.1-201ENST00000624475 456 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 AL445487.1-201ENST00000415694 1580 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 RAD17P1-201ENST00000418130 2042 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 Z73965.1-201ENST00000623412 2297 ntBASIC4.65□□□□□ -1.67
HDDC3Q8N4P3 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AL133268.1-201ENST00000405676 1401 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 VN2R3P-201ENST00000422626 1412 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC006042.3-201ENST00000454684 1469 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AL672167.1-204ENST00000641875 3017 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AL353743.4-201ENST00000422653 1547 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 RNU1-94P-201ENST00000362627 173 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 RPS26P8-201ENST00000393490 348 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AP000580.1-201ENST00000404439 358 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AL445189.1-201ENST00000405722 338 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 U3.35-201ENST00000408405 208 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 FO393419.3-201ENST00000428741 282 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms