Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 MIR1179-201ENST00000408703 91 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AL356968.2-201ENST00000412769 1257 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AC245052.5-201ENST00000416320 649 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AC006517.1-201ENST00000480485 328 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AC012158.1-204ENST00000483430 465 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 RN7SL323P-201ENST00000494712 295 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 RNA5SP360-201ENST00000516555 118 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AC100770.1-201ENST00000532310 322 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 RPL21P7-201ENST00000557463 483 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 SNORD91B-202ENST00000608459 222 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AC140113.4-201ENST00000622087 222 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 LINC00561-201ENST00000565815 2738 ntBASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 RN7SKP177-201ENST00000410567 355 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 REREP1Y-201ENST00000422655 198 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 REREP2Y-201ENST00000439103 200 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AL451050.1-201ENST00000450126 415 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 FCF1P7-201ENST00000451185 558 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 RPS3AP6-201ENST00000484430 795 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AC108022.1-201ENST00000493466 478 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AC006064.5-201ENST00000541782 248 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AC027176.2-201ENST00000559166 746 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AC112198.2-201ENST00000426589 6996 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 RAD23BP3-201ENST00000454157 1152 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 AL442067.2-201ENST00000614033 363 ntBASIC5□□□□□ -1.61
CCDC88AQ3V6T2 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5□□□□□ -1.61
CCDC88AQ3V6T2 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 SNORD66.1-201ENST00000391230 76 ntBASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 AC007688.1-201ENST00000475592 759 ntBASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 AL358832.1-201ENST00000497800 389 ntBASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 AL031666.3-201ENST00000609320 1006 ntBASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 AC021242.1-201ENST00000507315 2035 ntBASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 AL049781.1-201ENST00000623195 3585 ntBASIC4.99□□□□□ -1.61
CCDC88AQ3V6T2 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 RNA5SP72-201ENST00000364442 117 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 OR52E6-202ENST00000379946 954 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL161631.1-201ENST00000417933 486 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 HSFY1P1-201ENST00000423928 1178 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 RPS4XP12-201ENST00000461747 709 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 RN7SL293P-201ENST00000481765 281 ntBASIC4.98□□□□□ -1.61
CCDC88AQ3V6T2 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms