Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 LINC00561-201ENST00000565815 2738 ntBASIC5.79□□□□□ -1.48
RNF4P78317 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
RNF4P78317 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.79□□□□□ -1.48
RNF4P78317 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 OR11H4-201ENST00000315409 1082 ntBASIC5.79□□□□□ -1.48
RNF4P78317 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
RNF4P78317 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
RNF4P78317 MIR433-201ENST00000384837 93 ntBASIC5.79□□□□□ -1.48
RNF4P78317 GCNT1P4-201ENST00000404096 329 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 SPA17P1-201ENST00000416656 452 ntBASIC5.79□□□□□ -1.48
RNF4P78317 NUP35P2-201ENST00000416748 943 ntBASIC5.79□□□□□ -1.48
RNF4P78317 RPL21P111-201ENST00000418453 477 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 AC007394.1-201ENST00000421941 531 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC5.79□□□□□ -1.48
RNF4P78317 AC233981.1-201ENST00000423224 461 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 AL354707.3-201ENST00000427308 331 ntBASIC5.79□□□□□ -1.48
RNF4P78317 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 RPSAP65-201ENST00000429660 595 ntBASIC5.79□□□□□ -1.48
RNF4P78317 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.79□□□□□ -1.48
RNF4P78317 FCF1P1-201ENST00000432690 571 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC009961.2-201ENST00000435771 251 ntBASIC5.79□□□□□ -1.48
RNF4P78317 ARPC3P1-201ENST00000437218 533 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC5.79□□□□□ -1.48
RNF4P78317 AC099563.1-201ENST00000456086 418 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 MTCYBP18-201ENST00000501056 747 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.79□□□□□ -1.48
RNF4P78317 MTCO1P35-201ENST00000515270 228 ntBASIC5.79□□□□□ -1.48
RNF4P78317 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 AP001858.2-201ENST00000536213 601 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AL390334.1-201ENST00000556395 450 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AL845552.1-201ENST00000556820 323 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC026826.3-201ENST00000561747 158 ntBASIC5.79□□□□□ -1.48
RNF4P78317 MIR4271-201ENST00000582451 67 ntBASIC5.79□□□□□ -1.48
RNF4P78317 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 AC008687.2-201ENST00000597865 520 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.79□□□□□ -1.48
RNF4P78317 AC073091.2-201ENST00000603205 907 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AP001823.1-201ENST00000604056 1003 ntBASIC5.79□□□□□ -1.48
RNF4P78317 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.79□□□□□ -1.48
RNF4P78317 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 AL445264.1-201ENST00000621719 171 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AC073592.6-201ENST00000624271 415 ntBASIC5.79□□□□□ -1.48
RNF4P78317 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
RNF4P78317 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
RNF4P78317 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.79□□□□□ -1.48
RNF4P78317 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 AC117529.2-201ENST00000512159 2068 ntBASIC5.79□□□□□ -1.48
RNF4P78317 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
RNF4P78317 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 MTND5P17-201ENST00000418405 1603 ntBASIC5.78□□□□□ -1.48
RNF4P78317 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 U8.3-201ENST00000363321 132 ntBASIC5.78□□□□□ -1.48
RNF4P78317 RNU4-76P-201ENST00000364509 141 ntBASIC5.78□□□□□ -1.48
RNF4P78317 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.78□□□□□ -1.48
RNF4P78317 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.78□□□□□ -1.48
RNF4P78317 RNU6-225P-201ENST00000384613 103 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AC048351.1-201ENST00000420064 602 ntBASIC5.78□□□□□ -1.48
RNF4P78317 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.78□□□□□ -1.48
RNF4P78317 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.78□□□□□ -1.48
RNF4P78317 RPS26P40-201ENST00000435209 294 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 SNRPEP7-201ENST00000438350 220 ntBASIC5.78□□□□□ -1.48
RNF4P78317 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
RNF4P78317 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.78□□□□□ -1.48
RNF4P78317 RPL23AP15-201ENST00000450202 459 ntBASIC5.78□□□□□ -1.48
RNF4P78317 AL672138.1-201ENST00000450604 1015 ntBASIC5.78□□□□□ -1.48
RNF4P78317 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms