Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
FOXA1P55317 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.85□□□□□ -1.79
FOXA1P55317 MIR3138-201ENST00000585238 82 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
FOXA1P55317 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 HMGB1P50-201ENST00000605814 607 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.85□□□□□ -1.79
FOXA1P55317 MIR6868-201ENST00000611215 58 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.85□□□□□ -1.79
FOXA1P55317 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXA1P55317 IPO5-229ENST00000631030 192 ntTSL 5 BASIC3.85□□□□□ -1.79
FOXA1P55317 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.85□□□□□ -1.79
FOXA1P55317 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
FOXA1P55317 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXA1P55317 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXA1P55317 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
FOXA1P55317 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXA1P55317 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
FOXA1P55317 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
FOXA1P55317 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.84□□□□□ -1.79
FOXA1P55317 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
FOXA1P55317 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXA1P55317 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 RNA5SP322-201ENST00000363617 119 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 RNU1-89P-201ENST00000384592 164 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 MIR141-201ENST00000384975 95 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
FOXA1P55317 SMC4P1-201ENST00000414479 527 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
FOXA1P55317 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.84□□□□□ -1.79
FOXA1P55317 OR5BE1P-201ENST00000425977 939 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 USP12PY-201ENST00000427677 1064 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.84□□□□□ -1.79
FOXA1P55317 ATP5HP2-201ENST00000433885 485 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.84□□□□□ -1.79
FOXA1P55317 TBCAP1-201ENST00000436520 327 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 AC083863.1-201ENST00000438811 231 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 ELOCP3-201ENST00000439303 348 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 RPS17P13-201ENST00000448974 407 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 AL133477.1-201ENST00000457472 514 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 RNU7-157P-201ENST00000459600 66 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 AC105137.1-201ENST00000484355 562 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 CEACAMP10-202ENST00000495431 496 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 PPM1AP1-201ENST00000502740 1135 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 BTF3L4P4-201ENST00000506381 449 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 AC093840.1-201ENST00000511599 336 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.84□□□□□ -1.79
FOXA1P55317 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.84□□□□□ -1.79
FOXA1P55317 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC3.84□□□□□ -1.79
FOXA1P55317 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXA1P55317 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.84□□□□□ -1.79
FOXA1P55317 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC3.84□□□□□ -1.79
FOXA1P55317 MIR486-1-201ENST00000612171 68 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 MIR8059-201ENST00000620427 81 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 OR5BE1P-202ENST00000641168 1176 ntBASIC3.84□□□□□ -1.79
FOXA1P55317 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.8
FOXA1P55317 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.84□□□□□ -1.8
FOXA1P55317 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
FOXA1P55317 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.84□□□□□ -1.8
FOXA1P55317 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.84□□□□□ -1.8
FOXA1P55317 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.8
FOXA1P55317 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA1P55317 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA1P55317 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA1P55317 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA1P55317 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA1P55317 OR10J6P-201ENST00000289731 930 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA1P55317 OR51A6P-201ENST00000418680 1004 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC009480.2-201ENST00000422916 432 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC245028.1-201ENST00000423259 256 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 RPL23AP38-201ENST00000423801 469 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXA1P55317 HMGB1P37-201ENST00000439613 609 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 ARAFP2-201ENST00000440565 559 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 TPT1P13-201ENST00000449760 499 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXA1P55317 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA1P55317 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXA1P55317 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
FOXA1P55317 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
FOXA1P55317 HMGB3P13-201ENST00000511263 607 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 RNA5SP143-201ENST00000516936 115 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXA1P55317 CYCSP29-201ENST00000533731 318 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.83□□□□□ -1.8
FOXA1P55317 AC107016.1-201ENST00000550463 337 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXA1P55317 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms