Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC129915.3-201ENST00000634128 948 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 AC107068.1-201ENST00000563286 4218 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXA1P49639 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 OR11H5P-202ENST00000641612 1325 ntBASIC4.21□□□□□ -1.73
HOXA1P49639 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.21□□□□□ -1.73
HOXA1P49639 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
HOXA1P49639 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
HOXA1P49639 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.21□□□□□ -1.73
HOXA1P49639 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 RNU6-1214P-201ENST00000363650 109 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXA1P49639 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HOXA1P49639 RNA5SP104-201ENST00000410989 118 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC092745.2-202ENST00000411880 369 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 CEACAMP8-201ENST00000413902 580 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXA1P49639 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXA1P49639 PDSS1P1-201ENST00000422953 1114 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXA1P49639 AC019185.1-201ENST00000442718 389 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 NOP56P2-201ENST00000447491 769 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 OTX2P1-201ENST00000450956 354 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC233982.1-201ENST00000451247 436 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AURKAPS1-201ENST00000451805 1212 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 OR52E7P-201ENST00000452394 933 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 NECAP1P2-201ENST00000455668 727 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXA1P49639 TRBV8-2-201ENST00000475637 270 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXA1P49639 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 RPL23AP44-201ENST00000482216 473 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC020890.1-201ENST00000491837 504 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC025445.1-201ENST00000502728 300 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC111193.1-201ENST00000504097 155 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 HPRT1P2-201ENST00000505250 544 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXA1P49639 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXA1P49639 RNA5SP249-201ENST00000516127 99 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXA1P49639 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXA1P49639 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 MIR5708-201ENST00000579723 85 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXA1P49639 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXA1P49639 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXA1P49639 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 AL139395.1-201ENST00000603662 160 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 IMMP1LP1-201ENST00000605170 488 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 AC016877.3-201ENST00000606778 504 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AP003392.5-201ENST00000607857 415 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXA1P49639 AC112694.2-201ENST00000623697 768 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 RNF6P1-201ENST00000444889 1784 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
HOXA1P49639 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 AL137100.1-201ENST00000556703 1620 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA1P49639 AC104446.1-201ENST00000613728 1321 ntBASIC4.21□□□□□ -1.74
HOXA1P49639 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.2□□□□□ -1.74
HOXA1P49639 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA1P49639 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC007390.2-201ENST00000606229 3803 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA1P49639 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA1P49639 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC100871.1-201ENST00000507871 1456 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 HSPA8P17-201ENST00000427029 1382 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXA1P49639 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA1P49639 AC005294.1-201ENST00000355509 281 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 RNA5SP46-201ENST00000362370 120 ntBASIC4.2□□□□□ -1.74
HOXA1P49639 RNA5SP319-201ENST00000362768 119 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms