Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL031985.2-201ENST00000600955 480 ntBASIC5.15□□□□□ -1.58
COL18A1P39060 AL049840.6-202ENST00000603373 279 ntBASIC5.15□□□□□ -1.58
COL18A1P39060 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.15□□□□□ -1.58
COL18A1P39060 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL18A1P39060 HSPD1P11-201ENST00000508643 1702 ntBASIC5.15□□□□□ -1.59
COL18A1P39060 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL18A1P39060 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL18A1P39060 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL18A1P39060 Z95327.2-201ENST00000414579 1873 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 RNVU1-14-201ENST00000384770 164 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.14□□□□□ -1.59
COL18A1P39060 AL390879.2-203ENST00000426943 1121 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.14□□□□□ -1.59
COL18A1P39060 AC012158.1-204ENST00000483430 465 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.14□□□□□ -1.59
COL18A1P39060 RPL21P7-201ENST00000557463 483 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.14□□□□□ -1.59
COL18A1P39060 AC243312.2-201ENST00000623340 601 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 AC119674.1-207ENST00000641355 633 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL18A1P39060 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.14□□□□□ -1.59
COL18A1P39060 A2MP1-204ENST00000566278 4130 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 AC003985.2-201ENST00000562268 1669 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.14□□□□□ -1.59
COL18A1P39060 Z82217.1-201ENST00000625157 8149 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.14□□□□□ -1.59
COL18A1P39060 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.14□□□□□ -1.59
COL18A1P39060 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL18A1P39060 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.14□□□□□ -1.59
COL18A1P39060 MTND2P15-201ENST00000418575 892 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 BX119904.3-201ENST00000428194 957 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 CYCSP4-201ENST00000429682 331 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC5.14□□□□□ -1.59
COL18A1P39060 RPL21P23-201ENST00000446654 460 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC5.14□□□□□ -1.59
COL18A1P39060 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC5.14□□□□□ -1.59
COL18A1P39060 GMPSP1-201ENST00000514075 579 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.14□□□□□ -1.59
COL18A1P39060 OR5M7P-201ENST00000526140 972 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC5.14□□□□□ -1.59
COL18A1P39060 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC5.14□□□□□ -1.59
COL18A1P39060 MRPS21P9-201ENST00000571150 257 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 MIR5195-201ENST00000583555 115 ntBASIC5.14□□□□□ -1.59
COL18A1P39060 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.14□□□□□ -1.59
COL18A1P39060 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5.14□□□□□ -1.59
COL18A1P39060 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL18A1P39060 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.13□□□□□ -1.59
COL18A1P39060 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL18A1P39060 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.13□□□□□ -1.59
COL18A1P39060 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL18A1P39060 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL18A1P39060 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL18A1P39060 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL18A1P39060 RNA5SP267-201ENST00000364893 126 ntBASIC5.13□□□□□ -1.59
COL18A1P39060 OR6K3-202ENST00000368146 996 ntBASIC5.13□□□□□ -1.59
COL18A1P39060 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.13□□□□□ -1.59
COL18A1P39060 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
COL18A1P39060 CYCSP32-201ENST00000440548 321 ntBASIC5.13□□□□□ -1.59
COL18A1P39060 RANP8-201ENST00000444720 713 ntBASIC5.13□□□□□ -1.59
COL18A1P39060 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.13□□□□□ -1.59
COL18A1P39060 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.13□□□□□ -1.59
COL18A1P39060 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC5.13□□□□□ -1.59
COL18A1P39060 AC084759.1-201ENST00000561168 290 ntBASIC5.13□□□□□ -1.59
COL18A1P39060 AC095038.2-201ENST00000621464 1070 ntBASIC5.13□□□□□ -1.59
COL18A1P39060 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL18A1P39060 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL18A1P39060 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL18A1P39060 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL18A1P39060 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL18A1P39060 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL18A1P39060 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
COL18A1P39060 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL18A1P39060 RNU1-15P-201ENST00000353977 144 ntBASIC5.12□□□□□ -1.59
COL18A1P39060 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.12□□□□□ -1.59
COL18A1P39060 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.12□□□□□ -1.59
COL18A1P39060 AL121878.1-201ENST00000418638 859 ntBASIC5.12□□□□□ -1.59
COL18A1P39060 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.12□□□□□ -1.59
COL18A1P39060 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.12□□□□□ -1.59
COL18A1P39060 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC5.12□□□□□ -1.59
COL18A1P39060 AC008694.2-201ENST00000517591 306 ntBASIC5.12□□□□□ -1.59
COL18A1P39060 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.12□□□□□ -1.59
COL18A1P39060 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC5.12□□□□□ -1.59
COL18A1P39060 AC016839.1-201ENST00000578162 867 ntBASIC5.12□□□□□ -1.59
COL18A1P39060 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.12□□□□□ -1.59
COL18A1P39060 AC026368.1-201ENST00000614934 690 ntBASIC5.12□□□□□ -1.59
COL18A1P39060 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC5.12□□□□□ -1.59
COL18A1P39060 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL18A1P39060 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC5.12□□□□□ -1.59
COL18A1P39060 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL18A1P39060 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.12□□□□□ -1.59
COL18A1P39060 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
COL18A1P39060 RPS7P15-201ENST00000415804 584 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC5.11□□□□□ -1.59
COL18A1P39060 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.11□□□□□ -1.59
COL18A1P39060 IGLV3-26-201ENST00000520756 302 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 OR5B10P-201ENST00000532869 642 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.11□□□□□ -1.59
COL18A1P39060 AL392088.2-201ENST00000637607 285 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
COL18A1P39060 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 140.1 ms