Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG1P18858 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC6.66□□□□□ -1.34
LIG1P18858 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.66□□□□□ -1.34
LIG1P18858 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG1P18858 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG1P18858 AC124947.2-202ENST00000552735 133 ntBASIC6.66□□□□□ -1.34
LIG1P18858 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG1P18858 GTF2IP22-201ENST00000554443 182 ntBASIC6.66□□□□□ -1.34
LIG1P18858 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.66□□□□□ -1.34
LIG1P18858 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG1P18858 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC6.66□□□□□ -1.34
LIG1P18858 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG1P18858 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.66□□□□□ -1.34
LIG1P18858 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC6.66□□□□□ -1.34
LIG1P18858 AP000860.1-201ENST00000605250 559 ntBASIC6.66□□□□□ -1.34
LIG1P18858 AC007038.2-201ENST00000608095 740 ntBASIC6.66□□□□□ -1.34
LIG1P18858 AC245014.3-201ENST00000618589 347 ntBASIC6.66□□□□□ -1.34
LIG1P18858 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.66□□□□□ -1.34
LIG1P18858 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
LIG1P18858 AC004158.1-201ENST00000564508 4319 ntBASIC6.66□□□□□ -1.34
LIG1P18858 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
LIG1P18858 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG1P18858 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG1P18858 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG1P18858 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
LIG1P18858 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG1P18858 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
LIG1P18858 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
LIG1P18858 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIG1P18858 AL034546.1-201ENST00000623740 3693 ntBASIC6.65□□□□□ -1.34
LIG1P18858 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.34
LIG1P18858 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIG1P18858 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.65□□□□□ -1.34
LIG1P18858 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIG1P18858 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.65□□□□□ -1.34
LIG1P18858 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.65□□□□□ -1.34
LIG1P18858 RNU6-660P-201ENST00000364566 109 ntBASIC6.65□□□□□ -1.34
LIG1P18858 RN7SKP226-201ENST00000364912 300 ntBASIC6.65□□□□□ -1.34
LIG1P18858 RN7SKP81-201ENST00000365603 331 ntBASIC6.65□□□□□ -1.34
LIG1P18858 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
LIG1P18858 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG1P18858 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 RPS25P9-201ENST00000435591 252 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 TRIM60P16-201ENST00000444048 694 ntBASIC6.65□□□□□ -1.34
LIG1P18858 RPL7P36-201ENST00000444633 681 ntBASIC6.65□□□□□ -1.34
LIG1P18858 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG1P18858 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 AC002553.2-201ENST00000453217 340 ntBASIC6.65□□□□□ -1.34
LIG1P18858 ACA64.1-201ENST00000459171 127 ntBASIC6.65□□□□□ -1.34
LIG1P18858 RN7SL72P-201ENST00000460697 269 ntBASIC6.65□□□□□ -1.34
LIG1P18858 KLF3P2-201ENST00000465138 268 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AC023424.2-201ENST00000493479 777 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG1P18858 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC6.65□□□□□ -1.34
LIG1P18858 CDH12P2-201ENST00000504393 298 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AC025458.1-201ENST00000506046 166 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 AC011411.1-201ENST00000509592 876 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.65□□□□□ -1.34
LIG1P18858 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC6.65□□□□□ -1.34
LIG1P18858 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG1P18858 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG1P18858 AC068305.2-201ENST00000550567 1205 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.65□□□□□ -1.34
LIG1P18858 AC007956.1-201ENST00000555623 542 ntBASIC6.65□□□□□ -1.34
LIG1P18858 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG1P18858 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG1P18858 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.65□□□□□ -1.34
LIG1P18858 AC006363.1-201ENST00000603806 463 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AC015982.1-201ENST00000608113 465 ntBASIC6.65□□□□□ -1.34
LIG1P18858 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
LIG1P18858 RNA5SP439-201ENST00000617595 124 ntBASIC6.65□□□□□ -1.34
LIG1P18858 AL136228.1-201ENST00000622221 319 ntBASIC6.65□□□□□ -1.34
LIG1P18858 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG1P18858 MTND1P37-201ENST00000636562 264 ntBASIC6.65□□□□□ -1.34
LIG1P18858 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG1P18858 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIG1P18858 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
LIG1P18858 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
LIG1P18858 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.35
LIG1P18858 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
LIG1P18858 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.65□□□□□ -1.35
LIG1P18858 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.65□□□□□ -1.35
LIG1P18858 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
LIG1P18858 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
LIG1P18858 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.65□□□□□ -1.35
LIG1P18858 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG1P18858 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG1P18858 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.64□□□□□ -1.35
LIG1P18858 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.64□□□□□ -1.35
LIG1P18858 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
LIG1P18858 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC6.64□□□□□ -1.35
LIG1P18858 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
LIG1P18858 ADAM24P-201ENST00000398655 2101 ntBASIC6.64□□□□□ -1.35
LIG1P18858 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms