Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.02□□□□□ -1.77
COL6A3P12111 AC135001.1-201ENST00000544546 283 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.02□□□□□ -1.77
COL6A3P12111 AC091178.1-203ENST00000584586 279 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 AC087241.4-201ENST00000612441 480 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 TTC3P1-201ENST00000399586 6081 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC4.02□□□□□ -1.77
COL6A3P12111 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
COL6A3P12111 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
COL6A3P12111 MIR504-201ENST00000385065 83 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.02□□□□□ -1.77
COL6A3P12111 AC091862.1-201ENST00000438016 1100 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 RNU2-27P-201ENST00000516185 142 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 AL606834.2-201ENST00000602954 668 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
COL6A3P12111 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC4.02□□□□□ -1.77
COL6A3P12111 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 RNA5SP453-201ENST00000362503 119 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 RNA5SP97-201ENST00000365006 84 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.02□□□□□ -1.77
COL6A3P12111 AC093698.1-201ENST00000423843 571 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 AL591419.1-201ENST00000427423 339 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 SNORA71B-202ENST00000439232 272 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 AC023271.1-201ENST00000445936 1090 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.02□□□□□ -1.77
COL6A3P12111 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.02□□□□□ -1.77
COL6A3P12111 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.02□□□□□ -1.77
COL6A3P12111 AC133552.5-201ENST00000604266 540 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 AL163642.2-201ENST00000604722 1019 ntBASIC4.02□□□□□ -1.77
COL6A3P12111 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A3P12111 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
COL6A3P12111 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.02□□□□□ -1.77
COL6A3P12111 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC4.02□□□□□ -1.77
COL6A3P12111 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
COL6A3P12111 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.01□□□□□ -1.77
COL6A3P12111 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.01□□□□□ -1.77
COL6A3P12111 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 LINC01109-201ENST00000603837 3081 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
COL6A3P12111 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.01□□□□□ -1.77
COL6A3P12111 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL6A3P12111 AC107083.1-201ENST00000439643 279 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 AC104058.1-201ENST00000448028 297 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 NANOGNBP1-201ENST00000448444 480 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 AC103783.1-201ENST00000520506 373 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 AC007823.1-201ENST00000569932 1566 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 AL731532.2-201ENST00000623542 1953 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
COL6A3P12111 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL6A3P12111 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 PSD3-203ENST00000428502 6330 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC4.01□□□□□ -1.77
COL6A3P12111 AL158827.1-201ENST00000416300 391 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.01□□□□□ -1.77
COL6A3P12111 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.01□□□□□ -1.77
COL6A3P12111 AC022695.1-201ENST00000522089 237 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 AC093591.2-201ENST00000565254 3843 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.01□□□□□ -1.77
COL6A3P12111 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.01□□□□□ -1.77
COL6A3P12111 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.01□□□□□ -1.77
COL6A3P12111 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 AL359922.3-201ENST00000624779 1670 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A3P12111 RIOK3P1-201ENST00000418778 1528 ntBASIC4.01□□□□□ -1.77
COL6A3P12111 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A3P12111 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4□□□□□ -1.77
COL6A3P12111 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4□□□□□ -1.77
COL6A3P12111 AL139413.1-201ENST00000421309 217 ntBASIC4□□□□□ -1.77
COL6A3P12111 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4□□□□□ -1.77
COL6A3P12111 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4□□□□□ -1.77
COL6A3P12111 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC4□□□□□ -1.77
COL6A3P12111 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4□□□□□ -1.77
COL6A3P12111 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4□□□□□ -1.77
COL6A3P12111 RNA5SP116-201ENST00000516132 98 ntBASIC4□□□□□ -1.77
COL6A3P12111 AL162274.2-201ENST00000614406 332 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms