Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 MEF2C-217ENST00000510942 3446 ntTSL 5 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 AFP-201ENST00000226359 1914 ntTSL 5 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 RMST-210ENST00000640149 2844 ntTSL 5 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 API5-210ENST00000534600 1760 ntTSL 5 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 RNU6-730P-201ENST00000383954 104 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 RNA5SP474-201ENST00000391234 90 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AL357752.1-201ENST00000412817 349 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 RPL7P4-203ENST00000430239 730 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 RPL21P2-201ENST00000440049 481 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 NF1P3-201ENST00000457709 450 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 RN7SL267P-201ENST00000485107 261 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AC026826.1-201ENST00000493002 361 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AC009567.2-201ENST00000502989 349 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AC131935.1-201ENST00000524621 333 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AP001922.4-201ENST00000526967 290 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 OR5BK1P-201ENST00000550421 823 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 C10orf82-203ENST00000588184 852 ntAPPRIS ALT2 TSL 3 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AC120057.5-201ENST00000623840 154 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 CCDC150P1-201ENST00000537123 2215 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 FANCD2P2-201ENST00000437591 1400 ntBASIC8.88□□□□□ -0.99
TRIM35Q9UPQ4 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 USP3-201ENST00000268049 5311 ntTSL 5 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 MTCO1P7-201ENST00000419523 1542 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 SNORD116-23-201ENST00000384645 92 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 AC026310.1-201ENST00000396004 378 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 ARF4P3-201ENST00000397387 509 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 RNU2-23P-201ENST00000410545 195 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 ATG3P1-201ENST00000419507 911 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 PDSS1P1-201ENST00000422953 1114 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 AC119618.1-201ENST00000434191 222 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 HSPE1P22-201ENST00000456856 327 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 HMGB3P26-201ENST00000560051 582 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 RPL29P33-201ENST00000587474 316 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 AL355377.1-201ENST00000621125 1653 ntBASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
TRIM35Q9UPQ4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
TRIM35Q9UPQ4 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC8.86□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms