Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 AC092647.1-201ENST00000420654 287 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 RAD23BP1-201ENST00000421404 1227 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 CHEK2P5-201ENST00000423877 246 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 RPS26P47-201ENST00000427219 348 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 BRWD1P3-201ENST00000428816 390 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AL512637.2-201ENST00000431287 1256 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 MOB1AP2-201ENST00000446060 614 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AURKAPS2-201ENST00000454983 333 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 RPL5P13-201ENST00000462840 709 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 NPM1P17-201ENST00000479221 602 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC024558.1-201ENST00000505008 528 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 RPL7L1P4-201ENST00000513004 707 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC034244.2-201ENST00000514668 858 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC068446.3-201ENST00000555285 382 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC090515.3-201ENST00000560431 315 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 BNIP3P40-201ENST00000596017 556 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC008536.1-201ENST00000602872 669 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC090181.2-201ENST00000602975 672 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC015849.2-201ENST00000605738 409 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 MIR432-201ENST00000606207 94 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC104763.3-201ENST00000613765 618 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AC026368.1-201ENST00000614934 690 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AP000943.4-201ENST00000622912 357 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 AL359715.5-201ENST00000623431 443 ntBASIC4.32□□□□□ -1.72
NDE1Q9NXR1 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.32□□□□□ -1.72
NDE1Q9NXR1 HSPA8P19-201ENST00000505359 1517 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 CIR1P2-201ENST00000514821 1342 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 RPL26P37-201ENST00000411983 438 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC079355.1-201ENST00000421770 223 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 RBMY1KP-201ENST00000423480 476 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 HMGB3P10-201ENST00000434734 572 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC245047.2-201ENST00000441060 530 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 HMGB1P16-201ENST00000447155 540 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 FAR2P1-206ENST00000449736 709 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC022431.1-201ENST00000450941 438 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 RPS4XP1-201ENST00000482189 787 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 RPL36AP41-201ENST00000493820 306 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC083829.1-201ENST00000503756 657 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 C1DP5-201ENST00000525775 383 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AL139286.1-201ENST00000604465 483 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC026741.1-201ENST00000605892 482 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC012603.1-201ENST00000606424 528 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AL512329.2-201ENST00000607350 548 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 MIR6826-201ENST00000617808 98 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC008115.4-201ENST00000619780 775 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 ZNF962P-201ENST00000443465 3140 ntBASIC4.31□□□□□ -1.72
NDE1Q9NXR1 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
NDE1Q9NXR1 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
NDE1Q9NXR1 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
NDE1Q9NXR1 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.3□□□□□ -1.72
NDE1Q9NXR1 MAPK10-373ENST00000641983 6772 ntBASIC4.3□□□□□ -1.72
NDE1Q9NXR1 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NDE1Q9NXR1 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NDE1Q9NXR1 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NDE1Q9NXR1 MIR16-2-201ENST00000362117 81 ntBASIC4.3□□□□□ -1.72
NDE1Q9NXR1 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
NDE1Q9NXR1 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms