Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 ERCC6-202ENST00000374127 1782 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 IGKV7-3-201ENST00000357453 298 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 RNU6-1279P-201ENST00000383917 103 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 MIR937-201ENST00000401271 86 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC011933.1-201ENST00000413334 321 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 ELOCP18-201ENST00000434209 337 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 MTCYBP14-201ENST00000457471 715 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 SEPT14P1-201ENST00000458703 648 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC116533.1-201ENST00000459748 321 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 MTND6P6-201ENST00000478031 263 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 RN7SL459P-201ENST00000481078 302 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC093824.1-201ENST00000508796 343 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC099522.1-202ENST00000514718 367 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 SNORD116-30-201ENST00000516468 85 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 MYL12AP1-201ENST00000518490 515 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 DEFB109D-201ENST00000529497 240 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC105233.3-201ENST00000531125 744 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 PSMB7P1-201ENST00000556349 514 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC115989.2-201ENST00000578640 563 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC012603.1-201ENST00000606424 528 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AL121890.3-201ENST00000618494 516 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 AC067852.7-201ENST00000623270 535 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 MAPK10-253ENST00000641010 4072 ntBASIC4.17□□□□□ -1.74
TREX1Q9NSU2 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
TREX1Q9NSU2 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC073429.2-201ENST00000569694 1444 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 RNA5SP366-201ENST00000365454 123 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AL161909.1-201ENST00000397390 712 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 RN7SKP182-201ENST00000410772 298 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AL592293.2-201ENST00000422292 996 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC068287.1-201ENST00000430283 295 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 BTF3P10-201ENST00000433415 495 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 ACTR3P2-201ENST00000439585 1257 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 EIF2S2P2-201ENST00000447161 982 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 RPL36AP13-201ENST00000457490 317 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 RN7SL303P-201ENST00000469773 251 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC025445.1-201ENST00000502728 300 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 PRELID3BP7-201ENST00000503606 469 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 IGHV3-63-201ENST00000518422 341 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC022655.2-201ENST00000577280 318 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 AC009237.17-201ENST00000618111 748 ntBASIC4.16□□□□□ -1.74
TREX1Q9NSU2 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TREX1Q9NSU2 USP9YP4-201ENST00000424401 1745 ntBASIC4.15□□□□□ -1.74
TREX1Q9NSU2 PNPT1P2-201ENST00000456768 2050 ntBASIC4.15□□□□□ -1.74
TREX1Q9NSU2 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
TREX1Q9NSU2 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.15□□□□□ -1.74
TREX1Q9NSU2 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms