Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC010683.1-201ENST00000473673 378 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC021382.1-201ENST00000483523 359 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 RPL23AP41-201ENST00000484754 458 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 OR5H5P-201ENST00000503164 928 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL390198.2-201ENST00000510553 222 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 RNA5SP96-201ENST00000516041 107 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 RNA5SP337-201ENST00000517007 109 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 IGHV3-57-201ENST00000520143 280 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 IGLV3-6-201ENST00000523937 250 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 OR5AN2P-201ENST00000534535 896 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 UBE2L4-201ENST00000587688 464 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 HNRNPA3P9-201ENST00000604913 979 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL596245.1-201ENST00000618994 362 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL158801.5-201ENST00000623123 465 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 SNX18P10-201ENST00000625014 519 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL159972.1-201ENST00000625150 448 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC010329.1-201ENST00000593903 8328 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC062029.1-202ENST00000606164 3651 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
CCDC140Q96MF4 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 RNY3P3-201ENST00000363816 102 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 RN7SKP292-201ENST00000365522 317 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 U3.20-201ENST00000390909 217 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 RPS4XP8-201ENST00000402039 771 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 OR9R1P-201ENST00000412200 877 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL807761.1-201ENST00000417622 171 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL358176.3-201ENST00000420757 454 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 UQCRBP1-201ENST00000421129 336 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC110602.1-201ENST00000437414 318 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 ATP6V1G1P4-201ENST00000438388 335 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 SEPT14P3-201ENST00000439401 183 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 RPS15AP9-201ENST00000439856 381 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL732372.2-207ENST00000445840 183 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL121578.2-201ENST00000448797 447 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 SEPT14P2-201ENST00000453405 183 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 RPS20P20-201ENST00000460498 340 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 RN7SL655P-201ENST00000486087 298 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 EIF3LP3-201ENST00000495197 822 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 MTCO2P30-201ENST00000503662 364 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms