Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL28A1Q2UY09 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC083843.3-201ENST00000623679 2186 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC073055.1-201ENST00000456901 1621 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC006042.3-201ENST00000454684 1469 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 TRIM51GP-201ENST00000534741 1350 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 MTND4P31-201ENST00000425607 1343 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 MTATP6P31-201ENST00000406985 692 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC092745.2-202ENST00000411880 369 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 TRGV6-201ENST00000417928 299 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC048351.1-201ENST00000420064 602 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC004074.1-201ENST00000421810 1063 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 EI24P4-201ENST00000423683 1078 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 RPL7AP49-201ENST00000429522 581 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC124944.2-201ENST00000429866 1242 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AL591438.1-201ENST00000433508 581 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC016772.1-201ENST00000444170 1261 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AL358794.1-201ENST00000445689 381 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 DUXAP8-207ENST00000456786 622 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC079168.1-201ENST00000458741 345 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC096571.1-202ENST00000506634 735 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC022360.1-201ENST00000521058 340 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 MTND2P32-201ENST00000521584 1038 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 HMGB1P1-201ENST00000522557 636 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC007224.1-201ENST00000564410 144 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC023575.1-201ENST00000580510 358 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 DUXAP10-204ENST00000612052 616 ntBASIC4.84□□□□□ -1.63
COL28A1Q2UY09 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.84□□□□□ -1.63
COL28A1Q2UY09 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL28A1Q2UY09 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
COL28A1Q2UY09 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL28A1Q2UY09 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.84□□□□□ -1.64
COL28A1Q2UY09 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.84□□□□□ -1.64
COL28A1Q2UY09 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 NSRP1P1-201ENST00000444067 1693 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RN7SKP153-201ENST00000365026 316 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC007618.1-201ENST00000366455 732 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RPL21P67-201ENST00000402896 478 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 NUDT19P3-201ENST00000404698 555 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AL590290.1-201ENST00000405336 380 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MIR1271-201ENST00000408537 86 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms