Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC124068.1-201ENST00000563131 678 ntBASIC4.1□□□□□ -1.75
LIM2P55344 LINC00557-201ENST00000563184 1279 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.1□□□□□ -1.75
LIM2P55344 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.1□□□□□ -1.75
LIM2P55344 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.1□□□□□ -1.75
LIM2P55344 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.1□□□□□ -1.75
LIM2P55344 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.1□□□□□ -1.75
LIM2P55344 AL354984.3-201ENST00000604803 325 ntBASIC4.1□□□□□ -1.75
LIM2P55344 MIR6748-201ENST00000610433 71 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AL136295.6-201ENST00000610486 658 ntBASIC4.1□□□□□ -1.75
LIM2P55344 SNX18P1Y-201ENST00000616231 511 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.1□□□□□ -1.75
LIM2P55344 AC010435.1-201ENST00000623353 1177 ntBASIC4.1□□□□□ -1.75
LIM2P55344 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.1□□□□□ -1.75
LIM2P55344 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
LIM2P55344 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIM2P55344 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIM2P55344 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIM2P55344 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIM2P55344 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
LIM2P55344 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIM2P55344 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
LIM2P55344 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.09□□□□□ -1.75
LIM2P55344 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
LIM2P55344 RNA5SP52-201ENST00000362448 134 ntBASIC4.09□□□□□ -1.75
LIM2P55344 RNA5SP509-201ENST00000364577 119 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.09□□□□□ -1.75
LIM2P55344 RNU4-31P-201ENST00000384211 141 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AL583835.1-201ENST00000399570 407 ntBASIC4.09□□□□□ -1.75
LIM2P55344 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIM2P55344 AL807761.1-201ENST00000417622 171 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AL592293.2-201ENST00000422292 996 ntBASIC4.09□□□□□ -1.75
LIM2P55344 MTND4P24-201ENST00000424002 397 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC023141.6-201ENST00000429418 337 ntBASIC4.09□□□□□ -1.75
LIM2P55344 NDUFA5P10-201ENST00000432147 357 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.09□□□□□ -1.75
LIM2P55344 HLA-N-201ENST00000437516 135 ntBASIC4.09□□□□□ -1.75
LIM2P55344 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIM2P55344 CBX1P1-201ENST00000440184 427 ntBASIC4.09□□□□□ -1.75
LIM2P55344 XKRY2-201ENST00000442362 1093 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.09□□□□□ -1.75
LIM2P55344 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.09□□□□□ -1.75
LIM2P55344 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.09□□□□□ -1.75
LIM2P55344 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIM2P55344 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.09□□□□□ -1.75
LIM2P55344 RAB9BP1-201ENST00000519581 626 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.09□□□□□ -1.75
LIM2P55344 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIM2P55344 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.09□□□□□ -1.75
LIM2P55344 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.09□□□□□ -1.75
LIM2P55344 AL049870.4-201ENST00000555741 486 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC090515.3-201ENST00000560431 315 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC023158.1-201ENST00000561632 1025 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.09□□□□□ -1.75
LIM2P55344 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.09□□□□□ -1.75
LIM2P55344 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.09□□□□□ -1.75
LIM2P55344 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.09□□□□□ -1.75
LIM2P55344 AC023813.4-201ENST00000607580 580 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC025016.1-201ENST00000616746 682 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AC007546.1-201ENST00000619452 559 ntBASIC4.09□□□□□ -1.75
LIM2P55344 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.09□□□□□ -1.75
LIM2P55344 AL356490.1-201ENST00000623079 479 ntBASIC4.09□□□□□ -1.75
LIM2P55344 HPVC1-201ENST00000629899 1198 ntBASIC4.09□□□□□ -1.75
LIM2P55344 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.09□□□□□ -1.75
LIM2P55344 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIM2P55344 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIM2P55344 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
LIM2P55344 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.09□□□□□ -1.76
LIM2P55344 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
LIM2P55344 AC107027.3-201ENST00000565095 3473 ntBASIC4.08□□□□□ -1.76
LIM2P55344 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
LIM2P55344 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIM2P55344 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.08□□□□□ -1.76
LIM2P55344 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIM2P55344 OR4K17-201ENST00000315543 1032 ntBASIC4.08□□□□□ -1.76
LIM2P55344 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIM2P55344 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIM2P55344 SNORD66.1-201ENST00000391230 76 ntBASIC4.08□□□□□ -1.76
LIM2P55344 EIF1P3-201ENST00000423841 334 ntBASIC4.08□□□□□ -1.76
LIM2P55344 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.08□□□□□ -1.76
LIM2P55344 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.08□□□□□ -1.76
LIM2P55344 CEACAMP1-201ENST00000434624 1035 ntBASIC4.08□□□□□ -1.76
LIM2P55344 RPS3AP54-201ENST00000435535 734 ntBASIC4.08□□□□□ -1.76
LIM2P55344 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.08□□□□□ -1.76
LIM2P55344 MTND2P21-201ENST00000436242 1042 ntBASIC4.08□□□□□ -1.76
LIM2P55344 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.08□□□□□ -1.76
LIM2P55344 MTCO3P43-201ENST00000440974 771 ntBASIC4.08□□□□□ -1.76
LIM2P55344 EIF2S2P2-201ENST00000447161 982 ntBASIC4.08□□□□□ -1.76
LIM2P55344 AL591363.1-201ENST00000450091 483 ntBASIC4.08□□□□□ -1.76
LIM2P55344 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.08□□□□□ -1.76
LIM2P55344 CABYRP1-201ENST00000465493 1045 ntBASIC4.08□□□□□ -1.76
LIM2P55344 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.08□□□□□ -1.76
LIM2P55344 AC010374.1-201ENST00000503762 1237 ntBASIC4.08□□□□□ -1.76
LIM2P55344 AC093840.1-201ENST00000511599 336 ntBASIC4.08□□□□□ -1.76
LIM2P55344 snoU109.6-201ENST00000516831 118 ntBASIC4.08□□□□□ -1.76
LIM2P55344 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.08□□□□□ -1.76
LIM2P55344 AC034205.1-201ENST00000520621 638 ntBASIC4.08□□□□□ -1.76
LIM2P55344 C1GALT1P3-201ENST00000522049 819 ntBASIC4.08□□□□□ -1.76
LIM2P55344 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 153.4 ms