Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSH6P52701 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH6P52701 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
MSH6P52701 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH6P52701 AC097461.1-201ENST00000568928 2821 ntBASIC5.76□□□□□ -1.49
MSH6P52701 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
MSH6P52701 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH6P52701 SEPT7P2-202ENST00000398921 823 ntBASIC5.76□□□□□ -1.49
MSH6P52701 TMX2P1-201ENST00000436507 708 ntBASIC5.76□□□□□ -1.49
MSH6P52701 TBCAP1-201ENST00000436520 327 ntBASIC5.76□□□□□ -1.49
MSH6P52701 AL445433.1-201ENST00000457507 257 ntBASIC5.76□□□□□ -1.49
MSH6P52701 AC104849.1-201ENST00000462623 405 ntBASIC5.76□□□□□ -1.49
MSH6P52701 RN7SL323P-201ENST00000494712 295 ntBASIC5.76□□□□□ -1.49
MSH6P52701 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.76□□□□□ -1.49
MSH6P52701 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.76□□□□□ -1.49
MSH6P52701 AC006064.5-201ENST00000541782 248 ntBASIC5.76□□□□□ -1.49
MSH6P52701 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC5.76□□□□□ -1.49
MSH6P52701 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.76□□□□□ -1.49
MSH6P52701 AC106782.4-201ENST00000568264 210 ntBASIC5.76□□□□□ -1.49
MSH6P52701 U3.45-201ENST00000607547 219 ntBASIC5.76□□□□□ -1.49
MSH6P52701 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH6P52701 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.76□□□□□ -1.49
MSH6P52701 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH6P52701 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
MSH6P52701 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH6P52701 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSH6P52701 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH6P52701 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSH6P52701 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH6P52701 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH6P52701 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.75□□□□□ -1.49
MSH6P52701 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH6P52701 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.75□□□□□ -1.49
MSH6P52701 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
MSH6P52701 SNORD96B-201ENST00000386148 79 ntBASIC5.75□□□□□ -1.49
MSH6P52701 RPL23AP25-201ENST00000430973 463 ntBASIC5.75□□□□□ -1.49
MSH6P52701 AL133244.1-201ENST00000456007 258 ntBASIC5.75□□□□□ -1.49
MSH6P52701 AC112206.1-201ENST00000468416 477 ntBASIC5.75□□□□□ -1.49
MSH6P52701 AC090589.1-201ENST00000473109 362 ntBASIC5.75□□□□□ -1.49
MSH6P52701 AL358832.1-201ENST00000497800 389 ntBASIC5.75□□□□□ -1.49
MSH6P52701 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.75□□□□□ -1.49
MSH6P52701 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.75□□□□□ -1.49
MSH6P52701 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.75□□□□□ -1.49
MSH6P52701 AC093853.1-201ENST00000515689 483 ntBASIC5.75□□□□□ -1.49
MSH6P52701 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH6P52701 OR8I1P-201ENST00000529291 931 ntBASIC5.75□□□□□ -1.49
MSH6P52701 DUX4L52-201ENST00000549363 777 ntBASIC5.75□□□□□ -1.49
MSH6P52701 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.75□□□□□ -1.49
MSH6P52701 COX6CP4-201ENST00000605798 228 ntBASIC5.75□□□□□ -1.49
MSH6P52701 AL391497.1-201ENST00000608671 547 ntBASIC5.75□□□□□ -1.49
MSH6P52701 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSH6P52701 AC022106.2-201ENST00000620114 757 ntBASIC5.75□□□□□ -1.49
MSH6P52701 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.75□□□□□ -1.49
MSH6P52701 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH6P52701 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.75□□□□□ -1.49
MSH6P52701 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
MSH6P52701 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH6P52701 MTCO1P12-201ENST00000414273 1543 ntBASIC5.74□□□□□ -1.49
MSH6P52701 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
MSH6P52701 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH6P52701 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
MSH6P52701 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH6P52701 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH6P52701 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH6P52701 PPIAP3-201ENST00000450588 505 ntBASIC5.74□□□□□ -1.49
MSH6P52701 RPL7P1-201ENST00000468161 747 ntBASIC5.74□□□□□ -1.49
MSH6P52701 AC012123.2-201ENST00000485809 248 ntBASIC5.74□□□□□ -1.49
MSH6P52701 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH6P52701 RNU6-352P-201ENST00000516908 107 ntBASIC5.74□□□□□ -1.49
MSH6P52701 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH6P52701 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.74□□□□□ -1.49
MSH6P52701 HMGB2P1-201ENST00000591146 634 ntBASIC5.74□□□□□ -1.49
MSH6P52701 AC008966.2-201ENST00000606157 453 ntBASIC5.74□□□□□ -1.49
MSH6P52701 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
MSH6P52701 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
MSH6P52701 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH6P52701 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.74□□□□□ -1.49
MSH6P52701 AP000542.2-201ENST00000623199 6179 ntBASIC5.74□□□□□ -1.49
MSH6P52701 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH6P52701 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
MSH6P52701 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH6P52701 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH6P52701 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSH6P52701 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSH6P52701 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH6P52701 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.73□□□□□ -1.49
MSH6P52701 RPS29P4-201ENST00000414733 161 ntBASIC5.73□□□□□ -1.49
MSH6P52701 RPS4XP4-201ENST00000443195 763 ntBASIC5.73□□□□□ -1.49
MSH6P52701 WBP1LP4-201ENST00000505043 344 ntBASIC5.73□□□□□ -1.49
MSH6P52701 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH6P52701 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC5.73□□□□□ -1.49
MSH6P52701 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH6P52701 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.73□□□□□ -1.49
MSH6P52701 MIR7975-201ENST00000619350 68 ntBASIC5.73□□□□□ -1.49
MSH6P52701 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH6P52701 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms