Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Z98755.1-201ENST00000407015 1384 ntBASIC4.3□□□□□ -1.72
SOX3P41225 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SOX3P41225 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
SOX3P41225 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SOX3P41225 OR4K15-201ENST00000305051 1216 ntBASIC4.3□□□□□ -1.72
SOX3P41225 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SOX3P41225 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SOX3P41225 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SOX3P41225 RNU6-666P-201ENST00000363499 107 ntBASIC4.3□□□□□ -1.72
SOX3P41225 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SOX3P41225 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SOX3P41225 RNU6-354P-201ENST00000383862 107 ntBASIC4.3□□□□□ -1.72
SOX3P41225 RNU6-481P-201ENST00000384194 107 ntBASIC4.3□□□□□ -1.72
SOX3P41225 RNU6-610P-201ENST00000384264 107 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AL024507.1-201ENST00000412741 274 ntBASIC4.3□□□□□ -1.72
SOX3P41225 CEACAMP8-201ENST00000413902 580 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 AL807761.1-201ENST00000417622 171 ntBASIC4.3□□□□□ -1.72
SOX3P41225 RPL7P57-201ENST00000423238 740 ntBASIC4.3□□□□□ -1.72
SOX3P41225 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.3□□□□□ -1.72
SOX3P41225 ARL2BPP10-201ENST00000446487 531 ntBASIC4.3□□□□□ -1.72
SOX3P41225 TPT1P13-201ENST00000449760 499 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AC108463.1-201ENST00000450258 347 ntBASIC4.3□□□□□ -1.72
SOX3P41225 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.3□□□□□ -1.72
SOX3P41225 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.3□□□□□ -1.72
SOX3P41225 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 AC090142.1-201ENST00000465776 462 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 RPL21P47-201ENST00000483696 477 ntBASIC4.3□□□□□ -1.72
SOX3P41225 RPL36AP41-201ENST00000493820 306 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AC025164.1-201ENST00000496249 478 ntBASIC4.3□□□□□ -1.72
SOX3P41225 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.3□□□□□ -1.72
SOX3P41225 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 AC111000.3-201ENST00000508057 576 ntBASIC4.3□□□□□ -1.72
SOX3P41225 STMN1P2-201ENST00000508435 439 ntBASIC4.3□□□□□ -1.72
SOX3P41225 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.3□□□□□ -1.72
SOX3P41225 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 AP000916.1-201ENST00000533869 835 ntBASIC4.3□□□□□ -1.72
SOX3P41225 CYCSP28-201ENST00000534284 321 ntBASIC4.3□□□□□ -1.72
SOX3P41225 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.3□□□□□ -1.72
SOX3P41225 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 AL109741.3-201ENST00000561748 592 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 AC122134.1-201ENST00000565664 1104 ntBASIC4.3□□□□□ -1.72
SOX3P41225 SS18L2P2-201ENST00000583960 235 ntBASIC4.3□□□□□ -1.72
SOX3P41225 AL391001.1-201ENST00000602747 715 ntBASIC4.3□□□□□ -1.72
SOX3P41225 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX3P41225 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC4.3□□□□□ -1.72
SOX3P41225 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.3□□□□□ -1.72
SOX3P41225 U3.53-201ENST00000628922 216 ntBASIC4.3□□□□□ -1.72
SOX3P41225 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SOX3P41225 LINC01109-201ENST00000603837 3081 ntBASIC4.3□□□□□ -1.72
SOX3P41225 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.3□□□□□ -1.72
SOX3P41225 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.3□□□□□ -1.72
SOX3P41225 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SOX3P41225 AC005332.5-201ENST00000591222 2919 ntBASIC4.3□□□□□ -1.72
SOX3P41225 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.3□□□□□ -1.72
SOX3P41225 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.3□□□□□ -1.72
SOX3P41225 DHX40P1-201ENST00000588725 1412 ntBASIC4.29□□□□□ -1.72
SOX3P41225 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
SOX3P41225 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SOX3P41225 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SOX3P41225 ZNF137P-201ENST00000456718 1920 ntBASIC4.29□□□□□ -1.72
SOX3P41225 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SOX3P41225 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
SOX3P41225 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SOX3P41225 SNORD113.2-201ENST00000364166 89 ntBASIC4.29□□□□□ -1.72
SOX3P41225 SNORA71.2-201ENST00000364941 134 ntBASIC4.29□□□□□ -1.72
SOX3P41225 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
SOX3P41225 RNU6-1000P-201ENST00000391066 106 ntBASIC4.29□□□□□ -1.72
SOX3P41225 RNA5SP397-201ENST00000391323 118 ntBASIC4.29□□□□□ -1.72
SOX3P41225 RPS3AP23-201ENST00000401762 784 ntBASIC4.29□□□□□ -1.72
SOX3P41225 Z98745.1-201ENST00000402553 494 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC233289.1-201ENST00000403700 508 ntBASIC4.29□□□□□ -1.72
SOX3P41225 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
SOX3P41225 RNA5SP498-201ENST00000411342 120 ntBASIC4.29□□□□□ -1.72
SOX3P41225 Z74021.1-201ENST00000423610 407 ntBASIC4.29□□□□□ -1.72
SOX3P41225 DPY19L1P2-201ENST00000426647 915 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AL645931.1-201ENST00000439737 410 ntBASIC4.29□□□□□ -1.72
SOX3P41225 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.29□□□□□ -1.72
SOX3P41225 RPL7P33-201ENST00000444159 742 ntBASIC4.29□□□□□ -1.72
SOX3P41225 RPL34P26-201ENST00000445636 354 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC073587.1-201ENST00000447093 876 ntBASIC4.29□□□□□ -1.72
SOX3P41225 HMGB1P26-201ENST00000452520 628 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX3P41225 OR52A4P-201ENST00000472867 958 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC104763.1-201ENST00000475274 360 ntBASIC4.29□□□□□ -1.72
SOX3P41225 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX3P41225 MTND4LP2-201ENST00000502312 285 ntBASIC4.29□□□□□ -1.72
SOX3P41225 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.29□□□□□ -1.72
SOX3P41225 RN7SKP157-201ENST00000516174 282 ntBASIC4.29□□□□□ -1.72
SOX3P41225 RN7SKP92-201ENST00000517266 244 ntBASIC4.29□□□□□ -1.72
SOX3P41225 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX3P41225 AC104115.2-201ENST00000523026 687 ntBASIC4.29□□□□□ -1.72
SOX3P41225 NPM1P35-201ENST00000533043 868 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms