Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RPL23AP12-201ENST00000467573 473 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.55□□□□□ -1.68
PTPN4P29074 HMGB1P3-201ENST00000502802 616 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.55□□□□□ -1.68
PTPN4P29074 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.55□□□□□ -1.68
PTPN4P29074 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.55□□□□□ -1.68
PTPN4P29074 AC034205.1-201ENST00000520621 638 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.55□□□□□ -1.68
PTPN4P29074 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.55□□□□□ -1.68
PTPN4P29074 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.55□□□□□ -1.68
PTPN4P29074 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.55□□□□□ -1.68
PTPN4P29074 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.55□□□□□ -1.68
PTPN4P29074 MIR4716-201ENST00000579628 84 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 AC091178.1-203ENST00000584586 279 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 AL121932.1-201ENST00000605542 214 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
PTPN4P29074 AL592437.2-201ENST00000421655 2434 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
PTPN4P29074 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 DHX40P1-201ENST00000588725 1412 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 AL136164.3-201ENST00000624429 3978 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
PTPN4P29074 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
PTPN4P29074 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PTPN4P29074 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PTPN4P29074 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
PTPN4P29074 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
PTPN4P29074 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PTPN4P29074 UBTFL3-201ENST00000418934 1024 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 NPM1P24-201ENST00000428039 894 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 NDUFA5P10-201ENST00000432147 357 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.54□□□□□ -1.68
PTPN4P29074 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.54□□□□□ -1.68
PTPN4P29074 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.54□□□□□ -1.68
PTPN4P29074 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.54□□□□□ -1.68
PTPN4P29074 AC092905.1-201ENST00000467527 949 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 RN7SL385P-201ENST00000468873 276 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 UBTFL6-201ENST00000477929 1024 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 AK3P4-201ENST00000504283 583 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.54□□□□□ -1.68
PTPN4P29074 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 AC133555.2-201ENST00000550213 292 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.54□□□□□ -1.68
PTPN4P29074 AC084757.1-201ENST00000559987 490 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 NPM1P47-201ENST00000560843 856 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 AC022726.1-201ENST00000587475 207 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 AC012557.1-201ENST00000607115 611 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 AC017076.1-201ENST00000607613 578 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 AC020634.1-201ENST00000608701 549 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.54□□□□□ -1.68
PTPN4P29074 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.54□□□□□ -1.68
PTPN4P29074 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.54□□□□□ -1.68
PTPN4P29074 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.54□□□□□ -1.68
PTPN4P29074 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTPN4P29074 AL031119.1-201ENST00000404707 1879 ntBASIC4.54□□□□□ -1.68
PTPN4P29074 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.54□□□□□ -1.68
PTPN4P29074 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN4P29074 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN4P29074 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.53□□□□□ -1.68
PTPN4P29074 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN4P29074 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PTPN4P29074 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN4P29074 SNORA70F-201ENST00000384142 135 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AL590762.2-201ENST00000395798 571 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN4P29074 LINC00993-201ENST00000420453 540 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 RPL18P10-201ENST00000425606 538 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AC073335.1-201ENST00000427776 363 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 NANOGP6-201ENST00000429190 847 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 MTND5P8-201ENST00000449817 1083 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.53□□□□□ -1.68
PTPN4P29074 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.53□□□□□ -1.68
PTPN4P29074 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.53□□□□□ -1.68
PTPN4P29074 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.53□□□□□ -1.68
PTPN4P29074 OR9N1P-202ENST00000494289 481 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN4P29074 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN4P29074 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN4P29074 IFITM8P-201ENST00000522529 394 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.53□□□□□ -1.68
PTPN4P29074 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.53□□□□□ -1.68
PTPN4P29074 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PTPN4P29074 AL049870.4-201ENST00000555741 486 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 HMGB3P26-201ENST00000560051 582 ntBASIC4.53□□□□□ -1.68
PTPN4P29074 AC124068.1-201ENST00000563131 678 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms