Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 snoU109.6-201ENST00000516831 118 ntBASIC4.12□□□□□ -1.75
SDC1P18827 AC103833.1-201ENST00000517442 172 ntBASIC4.12□□□□□ -1.75
SDC1P18827 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.12□□□□□ -1.75
SDC1P18827 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
SDC1P18827 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.12□□□□□ -1.75
SDC1P18827 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.12□□□□□ -1.75
SDC1P18827 AL354984.3-201ENST00000604803 325 ntBASIC4.12□□□□□ -1.75
SDC1P18827 MIR432-201ENST00000606207 94 ntBASIC4.12□□□□□ -1.75
SDC1P18827 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.12□□□□□ -1.75
SDC1P18827 AC067931.1-201ENST00000624190 671 ntBASIC4.12□□□□□ -1.75
SDC1P18827 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SDC1P18827 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
SDC1P18827 AC006971.1-201ENST00000407916 4486 ntBASIC4.12□□□□□ -1.75
SDC1P18827 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.12□□□□□ -1.75
SDC1P18827 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.12□□□□□ -1.75
SDC1P18827 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SDC1P18827 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.12□□□□□ -1.75
SDC1P18827 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SDC1P18827 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SDC1P18827 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.11□□□□□ -1.75
SDC1P18827 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.11□□□□□ -1.75
SDC1P18827 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.11□□□□□ -1.75
SDC1P18827 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SDC1P18827 OR56B2P-202ENST00000641377 2453 ntBASIC4.11□□□□□ -1.75
SDC1P18827 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SDC1P18827 OR10J6P-201ENST00000289731 930 ntBASIC4.11□□□□□ -1.75
SDC1P18827 RN7SKP224-201ENST00000364140 325 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AL035419.1-201ENST00000397037 564 ntBASIC4.11□□□□□ -1.75
SDC1P18827 ATP5F1P2-201ENST00000398143 760 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AL583835.1-201ENST00000399570 407 ntBASIC4.11□□□□□ -1.75
SDC1P18827 RPS27AP11-201ENST00000402798 447 ntBASIC4.11□□□□□ -1.75
SDC1P18827 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.11□□□□□ -1.75
SDC1P18827 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.11□□□□□ -1.75
SDC1P18827 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.11□□□□□ -1.75
SDC1P18827 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.11□□□□□ -1.75
SDC1P18827 AC019050.1-201ENST00000418508 492 ntBASIC4.11□□□□□ -1.75
SDC1P18827 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.11□□□□□ -1.75
SDC1P18827 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.11□□□□□ -1.75
SDC1P18827 MTND2P30-201ENST00000456663 382 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AC008410.1-201ENST00000483777 339 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.11□□□□□ -1.75
SDC1P18827 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SDC1P18827 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.11□□□□□ -1.75
SDC1P18827 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.11□□□□□ -1.75
SDC1P18827 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.11□□□□□ -1.75
SDC1P18827 AC006064.5-201ENST00000541782 248 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AL109766.1-201ENST00000555080 552 ntBASIC4.11□□□□□ -1.75
SDC1P18827 SULT1C2P2-201ENST00000562517 294 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.11□□□□□ -1.75
SDC1P18827 CBX3P2-202ENST00000583365 535 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AC015849.2-201ENST00000605738 409 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AL023583.1-201ENST00000607518 1143 ntBASIC4.11□□□□□ -1.75
SDC1P18827 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.11□□□□□ -1.75
SDC1P18827 AL023881.1-201ENST00000621088 301 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AP006248.3-201ENST00000623580 594 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AP001784.1-201ENST00000624107 428 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AP002967.1-201ENST00000624203 539 ntBASIC4.11□□□□□ -1.75
SDC1P18827 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.11□□□□□ -1.75
SDC1P18827 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.11□□□□□ -1.75
SDC1P18827 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SDC1P18827 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.11□□□□□ -1.75
SDC1P18827 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.11□□□□□ -1.75
SDC1P18827 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.11□□□□□ -1.75
SDC1P18827 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SDC1P18827 Z98755.1-201ENST00000407015 1384 ntBASIC4.11□□□□□ -1.75
SDC1P18827 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SDC1P18827 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
SDC1P18827 AC011266.1-201ENST00000624119 3569 ntBASIC4.1□□□□□ -1.75
SDC1P18827 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC1P18827 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.1□□□□□ -1.75
SDC1P18827 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.1□□□□□ -1.75
SDC1P18827 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SDC1P18827 OR5P1P-201ENST00000299512 925 ntBASIC4.1□□□□□ -1.75
SDC1P18827 MIR331-201ENST00000362302 94 ntBASIC4.1□□□□□ -1.75
SDC1P18827 RNU6-666P-201ENST00000363499 107 ntBASIC4.1□□□□□ -1.75
SDC1P18827 SNORA58B-201ENST00000364259 136 ntBASIC4.1□□□□□ -1.75
SDC1P18827 RNA5SP175-201ENST00000364275 119 ntBASIC4.1□□□□□ -1.75
SDC1P18827 RNVU1-6-201ENST00000364688 164 ntBASIC4.1□□□□□ -1.75
SDC1P18827 RNU4-74P-201ENST00000411280 161 ntBASIC4.1□□□□□ -1.75
SDC1P18827 AC010385.1-201ENST00000412374 256 ntBASIC4.1□□□□□ -1.75
SDC1P18827 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC1P18827 AL161631.1-201ENST00000417933 486 ntBASIC4.1□□□□□ -1.75
SDC1P18827 AC073508.1-201ENST00000428866 656 ntBASIC4.1□□□□□ -1.75
SDC1P18827 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC1P18827 RN7SL809P-201ENST00000482040 297 ntBASIC4.1□□□□□ -1.75
SDC1P18827 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC1P18827 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.1□□□□□ -1.75
SDC1P18827 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC1P18827 AC107918.3-201ENST00000533272 382 ntBASIC4.1□□□□□ -1.75
SDC1P18827 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC1P18827 AP006289.1-201ENST00000538089 277 ntBASIC4.1□□□□□ -1.75
SDC1P18827 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC1P18827 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.1□□□□□ -1.75
SDC1P18827 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.1□□□□□ -1.75
SDC1P18827 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC1P18827 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC1P18827 SS18L2P2-201ENST00000583960 235 ntBASIC4.1□□□□□ -1.75
SDC1P18827 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.1□□□□□ -1.75
SDC1P18827 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms